Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0972 ATGGGTGTACCCCAAAAATGGTTCAGAAATATAGTTCGGGGCAGATTCCTCAGATCATCCAACAAAGACATCGTTCTCGTTCTCCCTCGCACAAGTATTTGCACCAATGAATGCGAAGAAGCCATGCTTAGGAATGAAGAGTTCAGTTTCCCAACACCAATTTCTTCAATCACCAAGGAAGATGCTTCGGCCATTAAGATCCAAGCTTACTTCAGGGGACATCTTGCCAGACGAGCATATAAGGCTTTGAAGAGCCTAGTGAAGCTGCAAGCATTAGTTCGTGGGGTGTGGGTGAGGAAACAATCACGTATAGCAATGCAGTGTATGCACGCACTTGTACGATTACAAGTCAGGGTTCGTGCGAGGCAGCTCCTAGGTAGCTTTGATAAGGAACGACCTACTAATTTACAAAGTCAAAATGTATAG 426 0.4484 MGVPQKWFRNIVRGRFLRSSNKDIVLVLPRTSICTNECEEAMLRNEEFSFPTPISSITKEDASAIKIQAYFRGHLARRAYKALKSLVKLQALVRGVWVRKQSRIAMQCMHALVRLQVRVRARQLLGSFDKERPTNLQSQNV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0972 141 Pfam IQ calmodulin-binding motif 84 101 IPR000048 GO:0005515
Gso16g0972 141 Pfam IQ calmodulin-binding motif 62 81 IPR000048 GO:0005515
Gso16g0972 141 Gene3D - 57 111 - -
Gso16g0972 141 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
Gso16g0972 141 ProSiteProfiles IQ motif profile. 84 111 IPR000048 GO:0005515
Gso16g0972 141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 104 IPR027417 -
Gso16g0972 141 SMART iq_5 82 103 IPR000048 GO:0005515
Gso16g0972 141 SMART iq_5 59 81 IPR000048 GO:0005515
Gso16g0972 141 PANTHER IQ-DOMAIN 5-RELATED 6 126 - -
Gso16g0972 141 PANTHER OS04G0561100 PROTEIN 6 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0972 Gso-Chr16 26935797 26936624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0972 58 126 IQD Protein Family AT3G51380 76.812 1.89e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0972 - - gmx:100788207 271.166