Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso16g0964 | ATGACTCCTCAAATCATGAGCTTTGGAATTGCTAATATTATTCATAAGCAAATAACAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAAGAGTTCTAATAACTGGTTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCCTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAAACGAGCTAGTTTTTGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTGGTTTCTGTGTCCGGAACGGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGTTGATCATTGCAGCGATCTTACCCTTAACTCTGCTTACTTCCTTCTCAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCACAATTGGAGATTGAAAGGGCTGATGGCAAAGCGGCAAATTTGCTAAAGAAGTTTAATCAATTTAATACTTAA | 699 | 0.4077 | MTPQIMSFGIANIIHKQITSDWHSLCFEHTLPHPCMGKSSNNWLQHPLISWSAEIWGKEVRTADINPSFCNGWMLLWGNELVFDACRYFLMESGFALFVAFLINVAVVSVSGTVCSADNLSAENVDHCSDLTLNSAYFLLKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSGVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYLKAQLEIERADGKAANLLKKFNQFNT* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso16g0964 | 232 | Pfam | MafB19-like deaminase | 116 | 187 | IPR028883 | GO:0002100|GO:0008251 | |
| Gso16g0964 | 232 | Coils | Coil | 206 | 226 | - | - | |
| Gso16g0964 | 232 | PANTHER | CYTOSINE DEAMINASE FAMILY MEMBER | 1 | 229 | - | - | |
| Gso16g0964 | 232 | PANTHER | CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN | 1 | 229 | - | - | |
| Gso16g0964 | 232 | Gene3D | Cytidine Deaminase, domain 2 | 117 | 232 | - | - | |
| Gso16g0964 | 232 | SUPERFAMILY | Cytidine deaminase-like | 139 | 197 | IPR016193 | GO:0003824 | |
| Gso16g0964 | 232 | CDD | nucleoside_deaminase | 141 | 194 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso16g0964 | Gso-Chr16 | 26817557 | 26821119 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso16g0964 | 84 | 141 | Inorganic Solute Cotransporters | AT1G80830 | 63.793 | 3.53e-17 | 78.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso16g0964 | - | - | gsj:114389910 | 484.567 |