Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0962 ATGATTGGCAAGTTTCTTACAGGTAAAAGAAGAGTAAAGGATTTATTACTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAACCAATATTGGAGTTTCTGTATGCTTAAAATGTTATGGTGTGCACAGAAGTATTGGCTCTCAGATATCAAATGTTTTGTCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGACTTATTTTCCCAAAGGATATACAAAACCTGGACTAGATGCCAGTCATGAGCAGCGTGCGAAATTCATCCGGTTAGATATGTTTTCATCTAATAACTTTACACTGTACATCTACCATTCTTAG 396 0.3586 MIGKFLTGKRRVKDLLLQKDNRFCADCNAPDPKWASTNIGVSVCLKCYGVHRSIGSQISNVLSVTLDEWSSDEIDAMIEVGGNSSANSIYETYFPKGYTKPGLDASHEQRAKFIRLDMFSSNNFTLYIYHS* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0962 131 SMART arf_gap_3 11 124 IPR001164 GO:0005096
Gso16g0962 131 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 118 - -
Gso16g0962 131 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Gso16g0962 131 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Gso16g0962 131 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gso16g0962 131 SUPERFAMILY ArfGap/RecO-like zinc finger 9 117 IPR037278 -
Gso16g0962 131 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 115 IPR001164 GO:0005096
Gso16g0962 131 Gene3D Arf GTPase activating protein 6 125 IPR038508 -
Gso16g0962 131 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 118 IPR044518 GO:0005096|GO:0005543
Gso16g0962 131 Pfam Putative GTPase activating protein for Arf 10 116 IPR001164 GO:0005096
Gso16g0962 131 CDD ArfGap 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0962 Gso-Chr16 26737226 26738857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0962 2 115 C2H2 Transcription Factor Family AT4G21160 71.053 1.18e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0962 K12486 - gmx:100782349 272.707