Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0953 ATGGGAGGTGACAGTGCCATTGAGGAATCCGAAGGGGTCAACGTCAACATCAACGTTCGCTGCTCCAACGGTTTCAAGTTTTCCGTTCAGATTGCCGTCGATTCCACCGTTAGTTCCTTCAAGGACGTTGTCGCTCGCAACTGCGACATCCCTGCCGAACAACAGCGCCTCATTTACAAGGGTCGCATCTTGAAGGATGATCAAACCCTACGAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTCTGCTCCTGCCAATCCAACTGGTGGGACCAATACTAGTAGCACCAATACCAATACCACAACAAATAATGCTAGAGGTGCTGGTGCCAATGAAGGTGGGGGCTTAGGAGGGCTTGGTTTTGGAGCTTCACTATTCCCTGGGCTAGGTGTCAATGGGACTGGGGGCAATGGTTTATTTGGTGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCCTTTATTTCTAATCCCAATTTAGTGAGAGAAATAATGAATTCACCCACCATGCAGAATCTAATGAATAATCCTGAAATAGTACGGAATCTTATAATGAATAATCCGCAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAGTTTCAGGGACTCATGGTGGCCATGCAAGGGACCGATCAACAAATCCCTCCACCACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAACTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGTGGGCTTGGTCTGCCAGACCTTGAAAGCATGATGGGTGGTAGTGCTATGCCAGATGCTGCTTTATTGACCCAGCTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGGGAATCTGGTCAAACTGGCGGAGGCACTGAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAG 1536 0.4714 MGGDSAIEESEGVNVNINVRCSNGFKFSVQIAVDSTVSSFKDVVARNCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGSAPANPTGGTNTSSTNTNTTTNNARGAGANEGGGLGGLGFGASLFPGLGVNGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPTMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAVSGTHGGHARDRSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNPRRSLTTGVDARQQGPTGLGGLGLPDLESMMGGSAMPDAALLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTRESGQTGGGTEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0953 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 463 508 IPR015940 -
Gso16g0953 511 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 464 511 - -
Gso16g0953 511 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 462 - -
Gso16g0953 511 CDD UBA_PLICs 469 507 - -
Gso16g0953 511 Gene3D - 461 509 - -
Gso16g0953 511 MobiDBLite consensus disorder prediction 267 353 - -
Gso16g0953 511 SMART CBM 192 231 IPR006636 -
Gso16g0953 511 SMART CBM 400 435 IPR006636 -
Gso16g0953 511 SMART CBM 344 397 IPR006636 -
Gso16g0953 511 SMART CBM 138 179 IPR006636 -
Gso16g0953 511 MobiDBLite consensus disorder prediction 90 113 - -
Gso16g0953 511 CDD Ubl_Dsk2p_like 15 87 - -
Gso16g0953 511 Gene3D - 187 245 - -
Gso16g0953 511 SUPERFAMILY UBA-like 465 507 IPR009060 GO:0005515
Gso16g0953 511 SMART uba_6 469 507 IPR015940 -
Gso16g0953 511 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Gso16g0953 511 SUPERFAMILY Ubiquitin-like 13 102 IPR029071 -
Gso16g0953 511 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Gso16g0953 511 MobiDBLite consensus disorder prediction 267 342 - -
Gso16g0953 511 PANTHER UBIQUILIN 464 511 - -
Gso16g0953 511 PANTHER UBIQUILIN 9 462 - -
Gso16g0953 511 MobiDBLite consensus disorder prediction 85 116 - -
Gso16g0953 511 MobiDBLite consensus disorder prediction 446 466 - -
Gso16g0953 511 SMART ubq_7 15 86 IPR000626 GO:0005515
Gso16g0953 511 Pfam UBA/TS-N domain 469 505 IPR015940 -
Gso16g0953 511 Gene3D - 11 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0953 Gso-Chr16 26389173 26403352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0953 15 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 4.48e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0953 K04523 - gmx:100776447 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0352 2 3857489 3864051 Gso16g0953 16 26389173 26403352 GST
Gso1g1364 1 50308795 50315277 Gso16g0953 16 26389173 26403352 PCT
Gso11g0718 11 6408056 6414998 Gso16g0953 16 26389173 26403352 PCT
Gso16g0953 16 26389173 26403352 Gso1g1364 1 50308795 50315277 PCT
Gso16g0953 16 26389173 26403352 Gso11g0718 11 6408056 6414998 PCT