Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0948 ATGGGTGTCTGCTTCTCCTCTGGCCCGACACAGAACTCTTCTTCCCTCGACCGACCTTACTATTCAGGTTCAGCAAGCACTAACTGCAAAAACGTGGGAATCACCGAAACCACGAGCAGCAGCACCGTAAATAGACAGTTTTCCGTGATTGTGAGTGGAAGCTTCTATCGTCGTCCCATTTCTCTTCCTCCTCCTCCACCTGATGGCCTGATTCCGAAATGGCCAAACTTGAAGGTTTTCGATTTTGAGGAGTTGAAATCTGCCACAAACAATTTCAGGCATGACACATTGCTGGGTCAAGGTGGCTTTGGCCGAGTTTACAAGGGATGGTTGGATGAGGATACCCTCGCCCCTACCAAAGCAGGCTCCGGAATGGTCGTTGCCATAAAATGGTTGAACCCCGAAAGCACGCAAGGGTTTGGCGAGTGGCAGACAGAACTAAACATGAGAAGGCTTTCTCACCCCAACCTGGTCAATTTATTGGGTTACTGTTGGGACGATGATGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTAGACAATTATCTATTCAAAAGAAATCGTAACTTAGAATTACTTTCTTGGAACACACGGCTTAAAATAGCTATTGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCTTCTGAAAACAACGTCATTCACAGAGATTTCAAGTCCTCAAATATACTACTTGATGGAAATTACAATCCAAAGATCTCAGATTTTGGCTTGGCAAAATTGGGGTCTTCTGAGGGACAATCACATAATTACAATCCAAAGATCTCAGATTTTGGCTTGGCAAAATTGGGGTCTTCTGAGGGACAATCACATATCTCAGATTTAGGCTTGGCAAAATTGGGGCCTTCTGAGGGACAATCACATGCAAGTACCAAGAATTACAATCCAAAGACCTCAGATTTTGGCTTGGCAAAATTGGGGACTTCTGAGGGACAGTCACATAATTACAATCCAAAGATCTCAGATTTAGGCTTGGAAAAATTGGGGCCTTCTGAAGGACAATCACATGTAACTACCAGGGTCATGGGCACGTATGGTTATACTGCTCCAGAATACATGGCAGAAGGCCACTTGTATGTGAAGAGTGATGTCTACGGATTTGGCGTAGTGCTACTTGAAATACTGACAGGCATGCGGGCATTTGACCCAAAACGGCCGACAGGGCAGCATAACCTAGTTTTATGGACCAAGCCTCTTCTCTCTTCCAAAAAAAAGTTGAAAAAAATAATGGATACTAAGATAGAGGGTCAATATTCACTTGAGGCAGCCTGGCAAGCAGCACAACTTACTCTAAAATGCCTAAAATCTGTCCCTGAAGAACGTCCTTCTATGAAAGATGTAGTTGAGGCATTGGAAGCCATTGAAGCTATCCAAAACCCACAATTCGCAGTGTACATCTCAACCACCCCCTCGGCAGGGTCGTAA 1452 0.4477 MGVCFSSGPTQNSSSLDRPYYSGSASTNCKNVGITETTSSSTVNRQFSVIVSGSFYRRPISLPPPPPDGLIPKWPNLKVFDFEELKSATNNFRHDTLLGQGGFGRVYKGWLDEDTLAPTKAGSGMVVAIKWLNPESTQGFGEWQTELNMRRLSHPNLVNLLGYCWDDDELLLVYEFMPKGSLDNYLFKRNRNLELLSWNTRLKIAIGAARGLAFLHASENNVIHRDFKSSNILLDGNYNPKISDFGLAKLGSSEGQSHNYNPKISDFGLAKLGSSEGQSHISDLGLAKLGPSEGQSHASTKNYNPKTSDFGLAKLGTSEGQSHNYNPKISDLGLEKLGPSEGQSHVTTRVMGTYGYTAPEYMAEGHLYVKSDVYGFGVVLLEILTGMRAFDPKRPTGQHNLVLWTKPLLSSKKKLKKIMDTKIEGQYSLEAAWQAAQLTLKCLKSVPEERPSMKDVVEALEAIEAIQNPQFAVYISTTPSAGS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0948 483 MobiDBLite consensus disorder prediction 1 20 - -
Gso16g0948 483 Pfam Protein kinase domain 324 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0948 483 Gene3D Transferase(Phosphotransferase) domain 1 177 261 - -
Gso16g0948 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Gso16g0948 483 SUPERFAMILY Protein kinase-like (PK-like) 322 461 IPR011009 -
Gso16g0948 483 Gene3D Phosphorylase Kinase; domain 1 76 176 - -
Gso16g0948 483 ProSiteProfiles Protein kinase domain profile. 92 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0948 483 MobiDBLite consensus disorder prediction 284 305 - -
Gso16g0948 483 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 324 467 - -
Gso16g0948 483 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 258 282 - -
Gso16g0948 483 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 21 258 - -
Gso16g0948 483 Pfam Protein tyrosine and serine/threonine kinase 96 254 IPR001245 GO:0004672|GO:0006468
Gso16g0948 483 ProSitePatterns Protein kinases ATP-binding region signature. 98 130 IPR017441 GO:0005524
Gso16g0948 483 Gene3D Transferase(Phosphotransferase) domain 1 295 476 - -
Gso16g0948 483 PANTHER OS01G0588500 PROTEIN-RELATED 258 282 - -
Gso16g0948 483 PANTHER OS01G0588500 PROTEIN-RELATED 21 258 - -
Gso16g0948 483 PANTHER OS01G0588500 PROTEIN-RELATED 324 467 - -
Gso16g0948 483 SUPERFAMILY Protein kinase-like (PK-like) 71 256 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0948 Gso-Chr16 26257926 26261660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0948 325 460 Glycoside Hydrolase AT3G07070 47.794 3.14e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso16g0948 Pkinase 5.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0948 - - gsj:114388995 943.34