Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0947 ATGGGTCTCTGCTTCTCCTCCTCTTCATCCACACCTCACTCCTCTTCCCTCAACCGCCCTCAGCAGTACTCAGGCTCAGCGAGCACTGACACCAAGAACGTGGGATTCTCCGCCACCACGAGCAGCGCCGGGAAGAGCCAATTCTCGGAGATCGCGAGTGGGAGCATCAACAGCAGCCAAGGCTCTCTTCCTCTTCCTCTTCCTTCTCCCGATGGCCAGATTCTAGAAAGGCCGAACCTGAAGGTGTTCAGCTTCGGAGACCTGAAATCTGCCACCAAGAGTTTCAAGTCCGATACATTGCTCGGTGAAGGCGGGTTCGGAAGAGTTTACAAGGGATGGTTGGATGAGAAGACCCTCTCCCCGGCCAAAGCTGGCTCCGGAATGGTCGTTGCCATCAAAAAGTTGAACCCCGAAAGCACGCAAGGCTTCCAAGAGTGGCAGTCAGAAGTGAACTTTTTAGGAAGGCTTTCTCACCCCAACCTGGTCAAGTTGTTGGGTTATTGTTGGGACGATGATGAGCTTCTTCTTGTGTATGAATTCTTGCCAAAGGGAAGCTTGGAGAATCATCTTTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCTCCGAAAAGCAAGTCATATACCGAGACTTCAAGGCCTCAAATATACTTCTCGATTTGAATTTCAATGCAAAAATCTCAGATTTTGGCTTGGCGAAATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGTACGTATGGTTATGCTGCTCCAGAATACATAGCAACAGGCCACTTGTATGTGAAGAGTGATGTCTACGGATTTGGCGTAGTGCTACTTGAAATACTGACAGGCATGCGGGCACTGGACACAAAACGGCCAACAGGGCAGCAGAACCTAGTTGAATGGACCAAGCCTCTTCTCTCTTCCAAGAAAAAGTTGAAAACAATAATGGATGCTAAGATAGTGGGTCAATATTCACCCAAGGCAGCGTTTCAAGCAGCACAACTTACTGTAAAATGTCTAGAACATGACCCCAAACAACGTCCTTCCATGAAAGAAGTGCTTGAGGGAATGGAAGCCATTGAAGCTATCCATGAAAAATCCAAGGAATCCAAAACCCGCAATTCTTATCAATCTCCTCGGCAGAGAGTTGTGAGAGTATAA 1221 0.4816 MGLCFSSSSSTPHSSSLNRPQQYSGSASTDTKNVGFSATTSSAGKSQFSEIASGSINSSQGSLPLPLPSPDGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLSPAKAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDLNFNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTKRPTGQQNLVEWTKPLLSSKKKLKTIMDAKIVGQYSPKAAFQAAQLTVKCLEHDPKQRPSMKEVLEGMEAIEAIHEKSKESKTRNSYQSPRQRVVRV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0947 406 PANTHER OS01G0588500 PROTEIN-RELATED 46 391 - -
Gso16g0947 406 MobiDBLite consensus disorder prediction 1 42 - -
Gso16g0947 406 Gene3D Transferase(Phosphotransferase) domain 1 181 403 - -
Gso16g0947 406 ProSiteProfiles Protein kinase domain profile. 95 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0947 406 MobiDBLite consensus disorder prediction 386 406 - -
Gso16g0947 406 ProSitePatterns Protein kinases ATP-binding region signature. 101 134 IPR017441 GO:0005524
Gso16g0947 406 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 46 391 - -
Gso16g0947 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Gso16g0947 406 SUPERFAMILY Protein kinase-like (PK-like) 74 375 IPR011009 -
Gso16g0947 406 Gene3D Phosphorylase Kinase; domain 1 79 180 - -
Gso16g0947 406 Pfam Protein tyrosine and serine/threonine kinase 98 375 IPR001245 GO:0004672|GO:0006468
Gso16g0947 406 CDD STKc_IRAK 101 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0947 Gso-Chr16 26163199 26168222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0947 71 377 Glycoside Hydrolase AT3G07070 50.000 5.42e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso16g0947 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0947 - - gmx:100794193 729.554