Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0943 ATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAAGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTCGCTGTTGTCGGCAAAGCTGGTGGTGAAAAATGGAAATCGCTATCTGATGCTGAAAAGGCCCCTTTCGTTGCTACTGCTGAGAAGAAGAAACAGGAGTATGAGAAAACTATTTCGGCTTACAATAAGCAATTGGAGGGAAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGGAGGAGGATGATGATGAGTAA 420 0.4762 MPKAKSDAKAADSRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEKAPFVATAEKKKQEYEKTISAYNKQLEGKNSEEDESDKSKSEVNDDEEDEEEDDDE* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0943 139 MobiDBLite consensus disorder prediction 122 139 - -
Gso16g0943 139 Coils Coil 88 115 - -
Gso16g0943 139 MobiDBLite consensus disorder prediction 105 139 - -
Gso16g0943 139 MobiDBLite consensus disorder prediction 1 43 - -
Gso16g0943 139 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Gso16g0943 139 MobiDBLite consensus disorder prediction 1 19 - -
Gso16g0943 139 Gene3D High mobility group box domain 21 122 IPR036910 -
Gso16g0943 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Gso16g0943 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 IPR031061 -
Gso16g0943 139 SUPERFAMILY HMG-box 25 108 IPR036910 -
Gso16g0943 139 CDD HMGB-UBF_HMG-box 37 103 - -
Gso16g0943 139 SMART hmgende2 36 107 IPR009071 -
Gso16g0943 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0943 Gso-Chr16 25948377 25949998 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso16g0943 HMG_box 5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0943 K25507 K22507 gmx:100499992 216.468