Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0932 ATGGCCATTAGTTCCCCTGGAATCCCATCTCACATTGATAATACAGTGCCAAGGCCTGAGCCTAAAATTCCAGAGGATCTATACCATTTGATTAAGAAGGCAGTTTCAATTAGGAAGCATCTTGAGAGGAACAAGAAGGACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGACAGCAGAATCTATCGACTTGCTCGCTACTACAACAAGACTAAGAAGCTCCTACTAGTTTGGGTGTAG 240 0.4292 MAISSPGIPSHIDNTVPRPEPKIPEDLYHLIKKAVSIRKHLERNKKDKDSKFRLILVDSRIYRLARYYNKTKKLLLVWV* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0932 79 SUPERFAMILY S15/NS1 RNA-binding domain 22 78 IPR009068 -
Gso16g0932 79 ProSitePatterns Ribosomal protein S15 signature. 37 67 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso16g0932 79 MobiDBLite consensus disorder prediction 1 20 - -
Gso16g0932 79 Gene3D - 21 79 - -
Gso16g0932 79 Pfam Ribosomal protein S15 22 72 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso16g0932 79 PANTHER 40S RIBOSOMAL PROTEIN S13 20 78 - -
Gso16g0932 79 CDD Ribosomal_S15p_S13e 21 79 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso16g0932 79 SMART Ribosomal_S15_2 20 77 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso16g0932 79 PANTHER RIBOSOMAL PROTEIN S15P/S13E 20 78 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0932 Gso-Chr16 25540621 25541412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0932 21 78 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 86.207 2.96e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0932 K02953 - zju:107414706 105.916