Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0930 ATGAGTCATGCAAAAGAGAATGAGGAAGCAGGGCAGAATGTACCCTTGGCTTTGGAAGAAACTCAGCAGTTAGTTGAAGCACAGATTCAACCAGAAGATTTTGCTGCTCCTGTGTCCACAGGGGGTACTTCAAATCATGTTGAAAACGGGAAAGTAGAGGTAGAGGCACGCGTGGAGGATAAAATTGTGAAACCAGAAGCGGATTCAGAGTGCATTCCACTACAAGATGTCCTAAATAGTATAAATACTCTTCACTCAGTCCCCGTAATGGACGATGCTCAAGTTTTAAATAACGCAGAAGGCGAATATGTGTCAGATGTGAAGAGCAAAGCTGAAGAAGCTCTGCAGTGTGAGAGGGGCATCAAGAATGATGCTAATGTTTGTCAAATCAATGCTGATACTGCTGAAACCACTGTGGCGGTGAGTCCCAAGGCTTTTGAGGCAGCTGATAGTAAAACTTGTGATAATGGTGACTCCAACTCCATATGCCCTAGTCATAATGAGCCTAATACACCACATGCCGTTCCTGCTGATGTAAGACCTGAAATCAAGAGTGGATTAGACAATGAGAATAGGGATAATGAAAAGCAGGCTGCTGCTGCACGTGCAGATAATGGAAACTCAATCTCAAAGAACTTGTACTTTTTGGATCCTGATGATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAGTTATGGAGATCTGTACACAGATTGGGCGGCTATGACAAGGTTACCTCATGTAAATTCTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACAACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTACGAAAGGCATACAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTCCTCTTGCAGAGCCAATAAATATTGAAAATCAGTCTGTCCAGGGTTCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGGATAGGAATTCTTTGTCTATGCAAAAGCGTGAAAAACAACTTAAAAACATCAATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGCGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTCAGCTTGCCTTCAAGAATTGATACTCAGCAGACGTCGGCTGTGGTGACCTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGAGCAATCAAAATAGAGAAGGCTGA 1599 0.4353 MSHAKENEEAGQNVPLALEETQQLVEAQIQPEDFAAPVSTGGTSNHVENGKVEVEARVEDKIVKPEADSECIPLQDVLNSINTLHSVPVMDDAQVLNNAEGEYVSDVKSKAEEALQCERGIKNDANVCQINADTAETTVAVSPKAFEAADSKTCDNGDSNSICPSHNEPNTPHAVPADVRPEIKSGLDNENRDNEKQAAAARADNGNSISKNLYFLDPDDSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEELNCLKLWRSVHRLGGYDKVTSCKFWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHTTKGGELNVPITPLAEPINIENQSVQGSASSGRARRDAAARAMQGWHSQRLLSNGEFSDPIIKDRNSLSMQKREKQLKNINLLKRKKSSDTVNVVKVAHSQPSRPQSDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPFESNQNREG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0930 532 SMART bright_3 231 322 IPR001606 GO:0003677
Gso16g0930 532 CDD ACD_sHsps_p23-like 447 523 - -
Gso16g0930 532 MobiDBLite consensus disorder prediction 184 199 - -
Gso16g0930 532 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 32 526 - -
Gso16g0930 532 ProSiteProfiles ARID domain profile. 230 321 IPR001606 GO:0003677
Gso16g0930 532 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 32 526 IPR045147 GO:0006357
Gso16g0930 532 MobiDBLite consensus disorder prediction 153 168 - -
Gso16g0930 532 Gene3D - 398 531 IPR008978 -
Gso16g0930 532 MobiDBLite consensus disorder prediction 150 178 - -
Gso16g0930 532 MobiDBLite consensus disorder prediction 184 203 - -
Gso16g0930 532 Gene3D - 230 328 IPR036431 GO:0003677
Gso16g0930 532 SUPERFAMILY ARID-like 225 330 IPR036431 GO:0003677
Gso16g0930 532 CDD ARID 232 317 - -
Gso16g0930 532 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 428 532 IPR002068 -
Gso16g0930 532 Pfam Hsp20/alpha crystallin family 445 528 IPR002068 -
Gso16g0930 532 SUPERFAMILY HSP20-like chaperones 437 524 IPR008978 -
Gso16g0930 532 Pfam ARID/BRIGHT DNA binding domain 233 317 IPR001606 GO:0003677
Gso16g0930 532 SMART ARID_2 227 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0930 Gso-Chr16 25458509 25466342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0930 214 525 ARID Transcription Factor Family AT1G76510 61.022 3.29e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso16g0930 HSP20 2.1e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0930 - - gmx:100803374 1041.57