Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0909 ATGGCTTTCCAAAGGGAAACTACAACCATGATTGGAGTTTGGCTTGTGGTGTTGATGGTTCTCTCCAAAGGGTTATCTTCAACAGGGGTTGTACCAGATAATTTCACTATACCTTCTTTTGTAAATATTGGGGTTCTCTATTCTTTCAATACTAGTGTTGGTAGAATGGTGAAAACTGCTGTACAAGCTGCGGTTGACGATGTAAATTCTGATCCATCTATTCTTGCTAACACTAAGTTGAAGGCCTCACTGCAAGAAGATACTAAATACAGAGGTTTTCTGAGCATTGCCGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCTATAATCGGTCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACTTTGTTAACTACTTTGGATGGAGAGAGGTTATTGCAGTTTATGGTGATGATGACCATGGGAGGAATGGAATAGGTGCATTAGGGGATAAGCTTTCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGGGAGGAGATTACGGATGTGCTTGTTCAGGCGGCCTTGGAAGAATCCCGGGTTGTAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTGTTAAGTGTGGCAAAGTCTCTAGGAATGATGGAAAACGGGTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATAGGTAGTCCCCTATCTTCAGATGCAACGGATGACATGCAAGGAGTTATTACACTTCGAATGTATATACCAGATTCAGAGCGCAAAAGATGGTTTTTTTCTAGGTGGAAAAACTTGACTACTGGAAAGACTGCTAATGGTTCCCAGGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTACGCTCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGGAACCAAATTACATTTTCACGTGATCCAAAGTTATCTCAACTACGTGGAGACAACATTCATCTTGATGCTGTGAAAATATTCAATGAAGGAAAGCTGTTGCATAAATATATTTATGAGGTTAACATGACTGGTGTATCAGGTCTATTCAAGTTTACATCTGATGGAGACCTTGTTAATCCTGCTTATGAAATCATCAATGTAATTGGAACTGGGACTCGGAGGGTTGGTTATTGGTCAAATTACACTGGATTATCAATTGTTCCTCCAGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGCTTTGGCCAGGAGAAACAACCCATAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTTCCAAAAAGGGTTAGTTACCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTTTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTACCCTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAGCTTGCCCGTCTTATCACAGCGGGTGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATACATCGAGTCTGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGATTCCAATGCTTGGGCATTTTTTATGCCGTTTACACCAATGATGTGGACTGTCACAGCTGTCTTTTTTCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTCGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGTTTGACATCAATCCTCACAGTTAAACAACTTTCTTCACCTGTCAAAGGCATTGAAAGTTTAAGAAGTAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAAATTATTTAATTGATGAAATTGGTATTGATGAATCCAGACTAGTTCCTCTGAAAACACCAGAAGAAACTGCAGAAGCACTTAAGAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAACCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGATTAGCATGTGTGCTTGCTCTCCTCATATATTGTATTCAGACCATGAGGCAGTACTCCAAGCACCGCCCCGAGGAGCTTGAGTCTTCTGGCCATGGCTCAGGATCTTCGTGTCTGCGCACATTCCTTACATTCATAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAAGAAAATGGAGGGGATATCATAA 2751 0.4191 MAFQRETTTMIGVWLVVLMVLSKGLSSTGVVPDNFTIPSFVNIGVLYSFNTSVGRMVKTAVQAAVDDVNSDPSILANTKLKASLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADFVNYFGWREVIAVYGDDDHGRNGIGALGDKLSERRCKISFKAPMTPEATREEITDVLVQAALEESRVVVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIGSPLSSDATDDMQGVITLRMYIPDSERKRWFFSRWKNLTTGKTANGSQGLSTYGIFAYDTVYALAHALDAFFKQGNQITFSRDPKLSQLRGDNIHLDAVKIFNEGKLLHKYIYEVNMTGVSGLFKFTSDGDLVNPAYEIINVIGTGTRRVGYWSNYTGLSIVPPEALYSKPPNRSSASQKLLPVLWPGETTHKPRGWVFPNNGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELARLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFMPFTPMMWTVTAVFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVKQLSSPVKGIESLRSSKEPIGYLQGSFTRNYLIDEIGIDESRLVPLKTPEETAEALKKGPQKGGVAAYVDERAYIELFLSSRCDYSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLRSFWGLYLVCGLACVLALLIYCIQTMRQYSKHRPEELESSGHGSGSSCLRTFLTFIDEKEEIVKSRSKRKKMEGIS* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0909 916 Gene3D - 476 591 - -
Gso16g0909 916 CDD PBP1_GABAb_receptor_plant 42 438 IPR044440 -
Gso16g0909 916 CDD GluR_Plant 479 821 - -
Gso16g0909 916 Gene3D - 59 409 - -
Gso16g0909 916 SUPERFAMILY Periplasmic binding protein-like II 456 823 - -
Gso16g0909 916 SMART GluR_14 482 823 IPR001320 GO:0015276|GO:0016020
Gso16g0909 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 906 - -
Gso16g0909 916 PANTHER GLUTAMATE RECEPTOR 16 906 - -
Gso16g0909 916 Pfam Ligand-gated ion channel 822 854 IPR001320 GO:0015276|GO:0016020
Gso16g0909 916 PIRSF IGluLR_plant 5 914 IPR017103 -
Gso16g0909 916 Pfam Receptor family ligand binding region 57 419 IPR001828 -
Gso16g0909 916 Gene3D - 791 821 - -
Gso16g0909 916 Pfam Bacterial extracellular solute-binding proteins, family 3 538 821 IPR001638 -
Gso16g0909 916 Gene3D - 740 790 - -
Gso16g0909 916 SUPERFAMILY Periplasmic binding protein-like I 37 472 IPR028082 -
Gso16g0909 916 Gene3D - 157 434 - -
Gso16g0909 916 Gene3D - 592 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0909 Gso-Chr16 24730674 24735680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0909 14 916 Ion Channels AT3G51480 58.278 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0909 K05387 - gmx:100812261 1798.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1347 1 50115959 50121167 Gso16g0909 16 24730674 24735680 PCT
Gso11g0736 11 6575268 6580164 Gso16g0909 16 24730674 24735680 PCT
Gso16g0909 16 24730674 24735680 Gso1g1347 1 50115959 50121167 PCT
Gso16g0909 16 24730674 24735680 Gso11g0736 11 6575268 6580164 PCT