Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0908 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGAGGATGAGGGGTTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGCCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTCGGTTGGGGTCAGTTTTCAACAGTTTGGCTTGCCTATGATACTACTACATCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCTGCCCAGTTTGTTCAGGCCGCCCTTCATGAAATTGATGTTCTTTCATCCCTTGCTGATGGTGTCGATATGGATTCAAAATGTGTTGTCCATTTGATTGATCACTTTAAGCACACAGGTCCTAATGGTCAGCACCTTTGCATGGTGCTTGAGTTTCTTGGGGATAGTTTGCTTCGTCTAATCAAATATAACCGGTATAAAGGCCTTCCTTTGGATAAAGTTAGGGAGATTTGCAAGTGCATTTTGATCGGTTTGGATTATTTACATAGAGAACATGGCATTATCCACTCAGACCTAAAACCAGAAAATGTTCTTCTGGTTTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCTGGACTCACCCCAATATTAGAGAGGCCTGAGGGAAACATAAATGGTGGTGGAGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGAAGAGCTAGGAGGGCAGTTGCAAAAATATCTGGGAGAAGTTCTCCAATAGGAGGAATTGAAGCTCCAAAGTCTGACAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATTCAAACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCCGGTTATTCCTTTGCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAGGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGGTTGCTACTTCTGGAGCAAAATCCAAGGACTTCTTTGACAGACATGGGGATCTCAAAAGGATTCGAAGACTTAAGTTTTGGCCGCTAAGCAAATTGTTGATTGATAGATATAAATTTTCAGAGCGCGATGCCTGTGAGTTTTCAGAGTTTCTTTTACCACTTCTTGATTTTGCACCCGAGAAGCGGCCAACAGCACAGCAGTGCCTGCAACTCCCATGGCTCCAGGGCATAGAGTCTACACCAAATGAAATGAGAAATGAATCTAGTGTGGAAAAGGTGGGTGTTGGGATGAGCAACCTTCAAATCAAGGTGGGAAAGTGA 1338 0.4454 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSLADGVDMDSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLDKVREICKCILIGLDYLHREHGIIHSDLKPENVLLVSTIDPAKDPVRSGLTPILERPEGNINGGGVTSLIEKKLKRRARRAVAKISGRSSPIGGIEAPKSDRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFAVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGDLKRIRRLKFWPLSKLLIDRYKFSERDACEFSEFLLPLLDFAPEKRPTAQQCLQLPWLQGIESTPNEMRNESSVEKVGVGMSNLQIKVGK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0908 445 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 445 - -
Gso16g0908 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0908 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0908 445 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0908 445 SUPERFAMILY Protein kinase-like (PK-like) 32 422 IPR011009 -
Gso16g0908 445 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 445 - -
Gso16g0908 445 CDD STKc_SRPK 27 413 - -
Gso16g0908 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Gso16g0908 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0908 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Gso16g0908 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Gso16g0908 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0908 Gso-Chr16 24636743 24641276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0908 4 428 EF-hand Containing Proteins AT5G22840 50.731 8.58e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso16g0908 Pkinase 4.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0908 K08832 - gmx:100811724 879.011