Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0899 ATGCCAGAAAACTGCATAGCACCCAAATCTGAACACAGCAACACTACTCACCCTGAGGAAGGACCACCTGAGATGACTCAGACTGTCCTTCCCATACAAACAAATAAGCAATCTTTCCCAAAACTGGCTATGTACCCCATAACTTTAAAGTTTGAGGAATTGGTGTACAAAGTTAAAATAGAGCAGAAGGGTGTGTGTTGGGGGAGCACAAGGAGTTGCAAAGAGAAGACCATACTGAAAGGAGTAACAGGCATGGTTTGTCCAGGAGAAATAATGGCCATGTTGGGGCCATCTGGCAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGAAGGCTCAGTGGCAAACTATCAGGAAAAGTCACATACAACAACCAGCCTTTTTCAGGTGCCATGAAAAGAAGAACAGGCTTTGTGGCACAGGATGATGTGTTATACCCTCATCTCACTGTCACTGAAACCCTTCTTTTCACTGCACTTCTGAGGCTCCCCAACACCTTAACCAAGGAAGAGAAAGTGCAGCATGTGGAGCATGTGATCAGTGAGCTAGGGTTGAGTAGGTGCAGGGGTAGCATGATTGGAGGCCCATTTTTCAGAGGGATTTCAGGAGGGGAGAGAAAGAGGGTCAGCATAGGCCAGGAAATGCTCATCAATCCAAGCCTGTTGCTGCTTGATGAGCCTACCTCAGGGTTGGACTCTACAACAGCACAAAGGATCATAACCACAATCAAAGGCTTGGCTAGTGGAGGAAGAACTGTTGTTACAACCATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAAGTGGTCTTGCTTTCTGAAGGGTGCCCCATCTATTATGGCCATGCTTCATCTGCAATGGACTACTTTTCTTCTGTTGGTTTTTCAACATCCATGATTGTCAATCCTGCTGATTTAATGCTTGATCTTGCCAATGGAATTGCTCCAGACCCCTCCAAGCTTGCAACGGAACACAGTGAGAGCCAGGAAGCAGAAAAGAAGTTGGTGAGGGAAGCTTTAATCTCTGCGTATGACAAGAACATAGCCACTAGGCTGAAAGATGAGCTATGTAGCTTTGAAGTTAATAACTACAAAGTCATTAAGGATTCTTCCACAAGAAATCACATAAAACCGGAGCAATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTGTTGCAAAGGGGGCTGAGGGAGAGAAGGTTTGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTCGCTTTCCTTGGTGGACTCCTGTGGTGGCACACCCCAGAATCACACATTGGAGATCGGATAGCCCTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTTCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCGTCCGGAATGTACCGTCTTTCTTCCTACTTTCTGGCCAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTCATCATAATCTATTGGATGGGAGGGCTCAAGCCTCATCCAGTTACCTTCCTCCTTTCCCTCCTTGTAGTTCTCTACAGTGTCCTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGCGCCATTTTGATGGAGGTCAAACAGGCCACAACTTTAGCTTCTGTGACAACCCTTGTGTTCCTCATTGCTGGAGGGTACTACATACAACAGATCCCTCCCTTCATAGAGTGGCTCAAGTACTTGAGCTATAGCTACTATTGTTACAAGCTTCTTGTGGGTGTGCAGTTCAATGATGATGATTATTATGAGTGCTCAAAGGGGGTGTTGTGCAAAGTTGGAGAGTTTCCTCAAATCAAATCAGTGGGTTTGAATCACTTGTGGGTTGATGTGACTATTATGGCCATGATGTTGGTAGGTTACAGACTAATTGCTTATTTAGCACTACTGAGAGTGAGGTAG 1956 0.4545 MPENCIAPKSEHSNTTHPEEGPPEMTQTVLPIQTNKQSFPKLAMYPITLKFEELVYKVKIEQKGVCWGSTRSCKEKTILKGVTGMVCPGEIMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNNQPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPNTLTKEEKVQHVEHVISELGLSRCRGSMIGGPFFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIITTIKGLASGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGHASSAMDYFSSVGFSTSMIVNPADLMLDLANGIAPDPSKLATEHSESQEAEKKLVREALISAYDKNIATRLKDELCSFEVNNYKVIKDSSTRNHIKPEQWCTSWWHQFKVLLQRGLRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVIIIYWMGGLKPHPVTFLLSLLVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLVGVQFNDDDYYECSKGVLCKVGEFPQIKSVGLNHLWVDVTIMAMMLVGYRLIAYLALLRVR* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0899 651 Gene3D - 65 295 IPR027417 -
Gso16g0899 651 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 648 - -
Gso16g0899 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 294 IPR027417 -
Gso16g0899 651 CDD ABCG_EPDR 46 283 - -
Gso16g0899 651 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524
Gso16g0899 651 MobiDBLite consensus disorder prediction 1 26 - -
Gso16g0899 651 Pfam ABC-2 type transporter 258 319 IPR043926 GO:0140359
Gso16g0899 651 Pfam ABC-2 type transporter 390 595 IPR013525 GO:0016020|GO:0140359
Gso16g0899 651 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 29 648 - -
Gso16g0899 651 Pfam ABC transporter 79 229 IPR003439 GO:0005524
Gso16g0899 651 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 301 IPR003439 GO:0005524
Gso16g0899 651 SMART AAA_5 88 278 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0899 Gso-Chr16 24000394 24003985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0899 78 277 Calmodulin-binding Proteins AT2G36910 28.365 9.40e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0899 K05681 - gmx:100776279 1278.08