LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0890	ATGTCAGTGACTTCATCATCTGTATCAGATATTCCATCATCACTATCATCTTCATCGAAAGACTCTTCAACGGAGCATCTCGCCGTTAGCATTGGCGAGATTGCCCTAGCCTACGTGGAGCATCTCGCTCCTGCTCCTAGCGGGACTGCTGCTACGTGGAGCATCTCGCTCCTGCTCTTGGCGGGACTGGGGAATCGCTTCTCCTACTGGCGTTTTTCTTTGGTTGACAAGTTTCTTTTGGGGTTTGCTTTTCCTTCATTGTTGGGTTTGACTGTGAGAAGAAAAGTTTGGTTTAGCTCTGGTGTTCGATTGGTTGTGAGAACAAAAGTTAATTTTAGTTTTGCTGAGTTTGATCGGGAGAAGCTAAGGGTTTGCGATTATAAAGTTATGGCACGTGTTGCTGACAAAATAAAATTGATAGATGGATCATGGGAAGCTCTTAAGCTTTCTGTAAGGATTACTGATCTTTGGTTCATTGGGATTCCCGGAAAGACTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGACGAAATCCATGTTGTTTGCAAGAAGGATCAGCTGAAGTCTCGCAAGGCTGATTTGAAAGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATCAAGAATGATGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATGTTTTACTGGAGTTACTGTTGTTAGGCAATGTGATATGGAACAGTTACCTTTTAGGAAATTCAGATTTGTTGCTTTTTCCAGTGTCATTGCTGGTCATTTTAAAATTGGACTCTTGGTTGATGTTATTGGCGTGGTTGATGAAGTGGTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTCGAATTTAAAGGATTTGAGTGGACAAGTGCTATCCTTTACACTCTGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGATATTGAAGATGAAAGGCCAATCGTTATTCTCTTGACTCATGCTAGGATTAAGGAAGCACAGGATTTAGGGATCGAGGTTAGATCAATTTTGACGCCTATTGGACAAGGGAGTTCACAGGTTTCAGGGTCATCTCAATTATCATCAAAAGATGTGTTTCTGTCAAAGACTGAAGAGTTTGTTTGTGTTACTGTTGCCAAGATCACAACCATAGTGATGGACAACTATTCATGGTGCTATCCGGCTTGTGGTCAATGTTATAAAAAAACTGACATGCAAACTGTGCCGTTCACATGTCCGTGTGGCAAAGAGAATGATCAACCTGTACTGAGGTATCGGGTTGAGGTGATGGTTAATCACAAGGGTGAAAAAACCAAATTTTTGATCTGGGATCGTGAATGTGTACAGTTAATTGGTCAGTCAACGGATGAAGTCAACAGGCTCAAAATAGAAGATGGGGATGTTGATTTAAATGCCTCTCCTCAAGCACTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATATTGAGCTAGATATGATTCCTGATAGTGAGCAATCTCTGTCTATTACTGCTGATCATGGTCGGTCAAGGCTTGGCTCCAGTGAGCCTACAGAGTTTGAATCTCAATCAGTGTCTGTTACCGGGGATCATGACCCTCTTCTCAGGATTCCATTGACACCAACTAAGCGTGTATCTTTTGATGAGTTGGATAATGAGCGAAAAAACTTTCAGATTTCACCTGCTGAAGTTTCCTCGAACAAATTAGCTAAGCTTTCTCAGCCTGAATGA	1806	0.4059	MSVTSSSVSDIPSSLSSSSKDSSTEHLAVSIGEIALAYVEHLAPAPSGTAATWSISLLLLAGLGNRFSYWRFSLVDKFLLGFAFPSLLGLTVRRKVWFSSGVRLVVRTKVNFSFAEFDREKLRVCDYKVMARVADKIKLIDGSWEALKLSVRITDLWFIGIPGKTEQAEMVVVDSDGDEIHVVCKKDQLKSRKADLKENLTYVMHNFKVIKNDGKFRVCDHEYKLCFTGVTVVRQCDMEQLPFRKFRFVAFSSVIAGHFKIGLLVDVIGVVDEVVFRYVSSKNTRVVSNLKDLSGQVLSFTLWENYCLQFLSYLNDIEDERPIVILLTHARIKEAQDLGIEVRSILTPIGQGSSQVSGSSQLSSKDVFLSKTEEFVCVTVAKITTIVMDNYSWCYPACGQCYKKTDMQTVPFTCPCGKENDQPVLRYRVEVMVNHKGEKTKFLIWDRECVQLIGQSTDEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNSVVLKYSDESDLINIELDMIPDSEQSLSITADHGRSRLGSSEPTEFESQSVSVTGDHDPLLRIPLTPTKRVSFDELDNERKNFQISPAEVSSNKLAKLSQPE*	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g0890	601	PANTHER	RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED	141	465	-	-
	Gso16g0890	601	MobiDBLite	consensus disorder prediction	532	554	-	-
	Gso16g0890	601	Pfam	Domain of unknown function DUF223	169	256	IPR003871	-
	Gso16g0890	601	CDD	RPA1_DBD_B_like	266	337	-	-
	Gso16g0890	601	Pfam	Replication factor-A C terminal domain	381	468	IPR013955	-
	Gso16g0890	601	CDD	RPA1_DBD_C	365	505	IPR013955	-
	Gso16g0890	601	Gene3D	-	350	512	IPR012340	-
	Gso16g0890	601	CDD	RPA1_DBD_A_like	148	233	-	-
	Gso16g0890	601	PANTHER	REPLICATION FACTOR A 1, RFA1	141	465	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Gso16g0890	601	MobiDBLite	consensus disorder prediction	532	558	-	-
	Gso16g0890	601	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gso16g0890	601	Gene3D	-	245	349	IPR012340	-
	Gso16g0890	601	Gene3D	-	134	236	IPR012340	-
	Gso16g0890	601	SUPERFAMILY	Nucleic acid-binding proteins	147	236	IPR012340	-
	Gso16g0890	601	SUPERFAMILY	Nucleic acid-binding proteins	372	500	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0890	Gso-Chr16	22916010	22929812	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g0890	213	471	Core DNA Replication Machinery Family	AT5G08020	23.948	4.30e-10	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0890	-		-	gmx:102668313	845.884