Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso16g0882 | ATGGGTTCCAATGGTAGCAAAGCCACTTCTTCGTCTTTCGGTAGTTCTTCTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAAGGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTGTTGTCTTGGAACAACTTCTGGTTCTCACGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTAACATATGCTGATGGCAATGGAACAGACTCAGATGAGGTGAAAACAGAGTCATTTAGAAAGGTTATAGCTGGTGAAATGACTTGTGTGCCTTCTAACATTGACCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCATCTCTGTCCATTCTTCTTCAACTCATTCCTTGAACCCTACAAGTCATTGCCTTTCTCGGTTTAGCCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCAAGGCCTCGTCCTGTTTCTTCTGCCAATCTCTCAATATTTGACAATGAAGATGAGCATAATCTCAATCCTGGATCTCCTGGAAGATTGATAAACAGAAGTGAAACACAACAATGTAGTAACTTGCTTCCCGCATCTTTTTCCAATCAAATACATGCACAGTGTCATGAAGACGCTTCTAATAATTCAAGGTCAAATGTCCCGACATCAGGCGTAGTTGGAAACTTGCAGAGCTATCCCACAGATGGAGTATGTGCAAGAGAAAGGCCAGACGTGAACTTATTTTCTCTGAGAATTCAAACAGACACAGAAAATGTTGACAATGACACAAGACATATTGATCAACGAATTGGTGCTCGAGAACCAGTTGAACGGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCAATCAACATTGTCTGACCTCACCTTTTTCCCTTTGCAACAAGAGAGAGAGCTGAGAGATGCTAGCCTTCCTAGCCAAGATATTATTGACAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATCTTTAGCATCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGCCCCAGGTTCATGCTCTCCAGCGATTGGGAAGCCGGTTTGAAAATCTTTCTGGACATGATAGAACGTGTGTGTTGTCTGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCAATAATCGTAACACTAATTCAAATGATGATACTGGTGCTAGAGCTAACATATCTAGAATTGTTATGCTTGCTGAAGCCCTATTTGAGGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAATTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGAGGGGACATATGCATATCTGATTCAACGCCAACAGAGAACTCGAGTGACTAG | 1746 | 0.4233 | MGSNGSKATSSSFGSSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSHDSDNEDQVCDQNKVNGSDVTYADGNGTDSDEVKTESFRKVIAGEMTCVPSNIDLDGWGETSIPNTSSRTGSISVHSSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSRPRPVSSANLSIFDNEDEHNLNPGSPGRLINRSETQQCSNLLPASFSNQIHAQCHEDASNNSRSNVPTSGVVGNLQSYPTDGVCARERPDVNLFSLRIQTDTENVDNDTRHIDQRIGAREPVERNVRFSRTLSVGRLRDRVLRQSTLSDLTFFPLQQERELRDASLPSQDIIDRQAVEGDSRVSPSDHSTINSSTSRYPPSSMSNSIFSIQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRPQVHALQRLGSRFENLSGHDRTCVLSGQHRNGRCTCRINNRNTNSNDDTGARANISRIVMLAEALFEVLDEIHLQSVVLSSRPSVSSIGPVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTENSSD* | 582 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 58 | 73 | - | - | |
Gso16g0882 | 581 | CDD | RING-H2_PA-TM-RING | 522 | 565 | - | - | |
Gso16g0882 | 581 | ProSiteProfiles | Zinc finger RING-type profile. | 523 | 565 | IPR001841 | - | |
Gso16g0882 | 581 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 488 | 569 | IPR013083 | - | |
Gso16g0882 | 581 | SMART | ring_2 | 523 | 564 | IPR001841 | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Gso16g0882 | 581 | Pfam | Ring finger domain | 522 | 565 | IPR001841 | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 343 | 364 | - | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 155 | 179 | - | - | |
Gso16g0882 | 581 | SUPERFAMILY | RING/U-box | 501 | 572 | - | - | |
Gso16g0882 | 581 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 580 | - | - | |
Gso16g0882 | 581 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 580 | - | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 336 | 364 | - | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 155 | 192 | - | - | |
Gso16g0882 | 581 | MobiDBLite | consensus disorder prediction | 44 | 79 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso16g0882 | Gso-Chr16 | 21881173 | 21885873 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso16g0882 | 273 | 572 | C3H Transcription Factor Family | AT5G45290 | 64.169 | 2.68e-112 | 344 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso16g0882 | - | - | gmx:100800896 | 1063.14 |