Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0882 ATGGGTTCCAATGGTAGCAAAGCCACTTCTTCGTCTTTCGGTAGTTCTTCTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAAGGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTGTTGTCTTGGAACAACTTCTGGTTCTCACGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTAACATATGCTGATGGCAATGGAACAGACTCAGATGAGGTGAAAACAGAGTCATTTAGAAAGGTTATAGCTGGTGAAATGACTTGTGTGCCTTCTAACATTGACCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCATCTCTGTCCATTCTTCTTCAACTCATTCCTTGAACCCTACAAGTCATTGCCTTTCTCGGTTTAGCCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCAAGGCCTCGTCCTGTTTCTTCTGCCAATCTCTCAATATTTGACAATGAAGATGAGCATAATCTCAATCCTGGATCTCCTGGAAGATTGATAAACAGAAGTGAAACACAACAATGTAGTAACTTGCTTCCCGCATCTTTTTCCAATCAAATACATGCACAGTGTCATGAAGACGCTTCTAATAATTCAAGGTCAAATGTCCCGACATCAGGCGTAGTTGGAAACTTGCAGAGCTATCCCACAGATGGAGTATGTGCAAGAGAAAGGCCAGACGTGAACTTATTTTCTCTGAGAATTCAAACAGACACAGAAAATGTTGACAATGACACAAGACATATTGATCAACGAATTGGTGCTCGAGAACCAGTTGAACGGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCAATCAACATTGTCTGACCTCACCTTTTTCCCTTTGCAACAAGAGAGAGAGCTGAGAGATGCTAGCCTTCCTAGCCAAGATATTATTGACAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATCTTTAGCATCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGCCCCAGGTTCATGCTCTCCAGCGATTGGGAAGCCGGTTTGAAAATCTTTCTGGACATGATAGAACGTGTGTGTTGTCTGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCAATAATCGTAACACTAATTCAAATGATGATACTGGTGCTAGAGCTAACATATCTAGAATTGTTATGCTTGCTGAAGCCCTATTTGAGGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAATTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGAGGGGACATATGCATATCTGATTCAACGCCAACAGAGAACTCGAGTGACTAG 1746 0.4233 MGSNGSKATSSSFGSSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSHDSDNEDQVCDQNKVNGSDVTYADGNGTDSDEVKTESFRKVIAGEMTCVPSNIDLDGWGETSIPNTSSRTGSISVHSSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSRPRPVSSANLSIFDNEDEHNLNPGSPGRLINRSETQQCSNLLPASFSNQIHAQCHEDASNNSRSNVPTSGVVGNLQSYPTDGVCARERPDVNLFSLRIQTDTENVDNDTRHIDQRIGAREPVERNVRFSRTLSVGRLRDRVLRQSTLSDLTFFPLQQERELRDASLPSQDIIDRQAVEGDSRVSPSDHSTINSSTSRYPPSSMSNSIFSIQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRPQVHALQRLGSRFENLSGHDRTCVLSGQHRNGRCTCRINNRNTNSNDDTGARANISRIVMLAEALFEVLDEIHLQSVVLSSRPSVSSIGPVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTENSSD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0882 581 MobiDBLite consensus disorder prediction 58 73 - -
Gso16g0882 581 CDD RING-H2_PA-TM-RING 522 565 - -
Gso16g0882 581 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Gso16g0882 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 569 IPR013083 -
Gso16g0882 581 SMART ring_2 523 564 IPR001841 -
Gso16g0882 581 MobiDBLite consensus disorder prediction 1 28 - -
Gso16g0882 581 Pfam Ring finger domain 522 565 IPR001841 -
Gso16g0882 581 MobiDBLite consensus disorder prediction 343 364 - -
Gso16g0882 581 MobiDBLite consensus disorder prediction 1 31 - -
Gso16g0882 581 MobiDBLite consensus disorder prediction 155 179 - -
Gso16g0882 581 SUPERFAMILY RING/U-box 501 572 - -
Gso16g0882 581 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 580 - -
Gso16g0882 581 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 580 - -
Gso16g0882 581 MobiDBLite consensus disorder prediction 336 364 - -
Gso16g0882 581 MobiDBLite consensus disorder prediction 155 192 - -
Gso16g0882 581 MobiDBLite consensus disorder prediction 44 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0882 Gso-Chr16 21881173 21885873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0882 273 572 C3H Transcription Factor Family AT5G45290 64.169 2.68e-112 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0882 - - gmx:100800896 1063.14