Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0879 ATGGATAGGGAAAAGTATGATGAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCACTATCAGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTATACCAAGATTCTGATATATATCTGTTTGATGATCCCTTCAGTGCATTGGATGCTCATACAAGATCCCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAAATCAAAAATTGTGATTTATATAACTCATCAAGTAGAGTTCTTATCCGATGCTGATCTAATAGTGGTCATGAGAGAAGGAAGAATAACTCAATCAGGAAAATACAATGACATTCTCAGGTCAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTGTCTTTAATCAAGTCCTTGGAGAGAAGGCCAACATTTAAAACATCAACTTTAACCAAGGAGGACACAAGTTCAGTAAGTTATGACATAGTTAAACCCAAAGGGCAACTAGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTAGGGTTTAATGTCTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCCATCATATTACTTTCAACGATACTCACTGTGGCTTTTCAGATTGCTAGCAATTATTGGATGATTTTGGCTACTCCTATGTCTGCAACTGCAGAACCTGATATTGGAAGCTTTAAACTTATGGTTGTCTATGTTGCTTTGTCAATTGGAAGTTCCATTTTCACCTTTGCCAGAGCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCATTGTGATCTTTAATAAAATGCATTTGTGCATTTTTCGAGCACCAATATCATATTTTGATGCCACCTCGAGTGGGCGAATCCTTAATAGAACCAAAGTGCACTAG 930 0.3925 MDREKYDEVLEACSLTKDLEVLPFGDQTTIREKGINLSGGQKQRVQIARALYQDSDIYLFDDPFSALDAHTRSHLFKECLLGLLKSKIVIYITHQVEFLSDADLIVVMREGRITQSGKYNDILRSGTDFMELVGAHKAALSLIKSLERRPTFKTSTLTKEDTSSVSYDIVKPKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPIILLSTILTVAFQIASNYWMILATPMSATAEPDIGSFKLMVVYVALSIGSSIFTFARAFLAVIAGYKTAIVIFNKMHLCIFRAPISYFDATSSGRILNRTKVH* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0879 309 Gene3D - 1 153 IPR027417 -
Gso16g0879 309 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 306 - -
Gso16g0879 309 SUPERFAMILY ABC transporter transmembrane region 204 305 IPR036640 GO:0005524|GO:0016021
Gso16g0879 309 Pfam ABC transporter transmembrane region 207 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0879 309 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 207 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0879 309 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 306 - -
Gso16g0879 309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 134 IPR027417 -
Gso16g0879 309 Gene3D ABC transporter type 1, transmembrane domain 169 308 IPR036640 GO:0005524|GO:0016021
Gso16g0879 309 Pfam ABC transporter 25 64 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0879 Gso-Chr16 21768801 21770417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0879 22 151 Calmodulin-binding Proteins AT2G36910 32.353 6.29e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0879 - - gmx:100811450 562.377