Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0867 ATGGAGTCCGGTAAGAACGAGCGTGTGACGATTCGCGAGTTCTGCGCGAATGGAAGTTGCATGGAAGCGAAGGAACTTGAGGCCAAGCTTGATGAAGGAAACATTCAAGAAGCAGAATCGGCATTGCGTGAAGGGTTGTCACTAAATTTTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAGAGAGGTAATGTTGAAGGTGCACTTCGTGTGTTTGATGGGATTGATCTTGAAGCAGCCATACAGCGATTGCAAAGTTCCCTTTCTGAAAAAACACCTGTTAAGAAAGGCCCCACTCGCAGTGAATCACCTTCCTCCGTCTCTCAGCATGCTGCAACTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAACTGGACAAATTTACTGAAGCTGCTAAAGAATGCAAGCGTGTTCTTGATGCCGTTGAGAAGATATTTGGTCAGGGTATACCTGATACACAAGTGGACAACAAATTGCAGGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGACTGGTTGCTATAATGAGGCATTGTCTGCTTATAGGAATGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGATGGCATTTGCTGTGTTTATGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCCGTTCAGATTGATGGGTCCTATGTACCCAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTTTTGAGAAAGTTTAGCCTTGGTAAGATAAATTGGGATCCTTCTATTATGGAACACCTGACTTTTGCACTTTCAGCATGTGGTCAAACTTCTATTTTGGCAAAGCAATTTGAAGAGTTGGCACCTGGTGTATATCACCGTATTGACCGATGGAATTTTTTAGCTCTATGTAATAGTGGAGCTGGAGAAAATGAAAGTGCTTTGAATCTGCTAAGGATGTCATTGCATAAACATGAAAGACCAGATGACCTTATATCATTATTATTGGCTGCGAAGATTTGCAGTGAGGATCCTCATCATGCTGCTGAGGGAGCAGGATATGCACAGAGAGCAATCAATATTGCTCAGGGCTTAGATGGGCATTTGAAAGGTGTGGGTCTTCGGATGTTGGGGCTTTGCCTGGGAAAACAAGCTAAGGTTTCTTCTTCCGACTTTGAGAGGTCTATGCTTCAATCCAAAGCTCTGCAATCATTGGAGGAGGCAGTTAGACTGGAGCGAAACAATTATGATCTAATTTTTGAGCTGGCTATTCAATATGCTGAGCACCGAAATTTAACTGCTGCTTTATCCTGTGCCAAGCAGTTCTTTGACAAAACTGGTGGCTCTAAATTAAAAGGTTGGAGATTGCTTGCTCTGGTTTTGTCTGCACAAAAAAGATTTTCAGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCACTACTCAGGCTGAAAGCCAAGCTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTACCGTTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCGTCTGGGCCTCTCAAACTTAGTTCACAGGTTGAGGATTATACAATAAATGAATTTGAAGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAATTGAAGGAATATTCAGCAGCAACAATTCACACTGAAGGTATTATGTTCGATGGTCGTGGAGAATATCAAGAAGCTCTTATTGGTACTTTCAATGCGGTCCTATTTGAACCAAACTATGTGCCAAGCAAGATCTTGATGGCTTCTTTGATACTGAAAATGGGTTTTAAAGCTTCACCTGTTGCTAGAAGCTTACTTTCTGATGCACTTAGAATAGAACCCACTAACCGTATGGCTTGGTATTACTTGGGATTAACTCACAAGGCTGACGGCCGATTAGTGGATGCTGCAGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCCGATCCCATTGAAAATTTCAGCTGTATGCTTTGA 2085 0.4297 MESGKNERVTIREFCANGSCMEAKELEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLEAAIQRLQSSLSEKTPVKKGPTRSESPSSVSQHAATLVLEAIYLKAKSLQKLDKFTEAAKECKRVLDAVEKIFGQGIPDTQVDNKLQEIVSHAVELLPELWKQTGCYNEALSAYRNALLSQWNLDNDCCARIQMAFAVFMLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLRKFSLGKINWDPSIMEHLTFALSACGQTSILAKQFEELAPGVYHRIDRWNFLALCNSGAGENESALNLLRMSLHKHERPDDLISLLLAAKICSEDPHHAAEGAGYAQRAINIAQGLDGHLKGVGLRMLGLCLGKQAKVSSSDFERSMLQSKALQSLEEAVRLERNNYDLIFELAIQYAEHRNLTAALSCAKQFFDKTGGSKLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLKLSSQVEDYTINEFEVWHGLANLYASLSHWKDAEICLQKARELKEYSAATIHTEGIMFDGRGEYQEALIGTFNAVLFEPNYVPSKILMASLILKMGFKASPVARSLLSDALRIEPTNRMAWYYLGLTHKADGRLVDAADCFQAASMLEESDPIENFSCML* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0867 694 Gene3D Tetratricopeptide repeat domain 167 535 IPR011990 GO:0005515
Gso16g0867 694 Gene3D Tetratricopeptide repeat domain 536 689 IPR011990 GO:0005515
Gso16g0867 694 Coils Coil 21 41 - -
Gso16g0867 694 Gene3D Tetratricopeptide repeat domain 24 166 IPR011990 GO:0005515
Gso16g0867 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Gso16g0867 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Gso16g0867 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Gso16g0867 694 SUPERFAMILY TPR-like 547 682 IPR011990 GO:0005515
Gso16g0867 694 SUPERFAMILY TPR-like 406 507 IPR011990 GO:0005515
Gso16g0867 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Gso16g0867 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Gso16g0867 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Gso16g0867 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Gso16g0867 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Gso16g0867 694 SMART tpr_5 652 685 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0867 Gso-Chr16 21294889 21301691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0867 3 694 Calmodulin-binding Proteins AT2G43040 71.511 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0867 K21843 - gmx:100811897 1344.33