Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso16g0844 | ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCGGGTTGGCGGTTCCTATGATGAGAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCCGTTTACCAGAGAAATAATTTCCCCCGTGACATTTTGGATAGGGAGGCTTATCTGCCGCCAGGACCTCCTGTTGGCCACTGGAGTCAAACCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATGATCAGATTGATGGTTTCAGGGATCGTGAGATTGACACCTATCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATGATTATGACTACAAGTCCCGAGCATCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATCATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAAGTAGTAGAAGAGATAGTAATTGGAGGCGACGCAAATCACGTGATCGGGAACGAGTTAAGAGTGGTCATAGTCGGGAAAGAGATCTGAGTCCGCATAGGAGACATGAGCGTTCTCATTCACATTCACATTCTCGTTCTCGATCTTGTTCACGTTCTCGATCCCCGTCTCATTCCCATTCCCGGTCTCAATCTCGTGGATATGATGACCATCCAAGATCTAGGTCCCCCCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCTGTGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTGGGAGCTGCCCAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATGATGGTTCCATCCGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCCCCTGCAGCAGATATTTCATTGTCTAATTCAGCAGCTATAGGAAAGAAAGGTTCAGAAGCAGGTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATCGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAACCCAGATGCCAAACAATCTACTGGTCCAGAGCAAACTGGTGCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAATGAGTCTGAACCTTCTAAGGTATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTGCTGTTGCACCGGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATACTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAACAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTATGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCAGGAAGTCACACAACTCTTGCCCAGAGTGCTGCTATTGATTCTCAGGCACAGCCACAGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAAGCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAAGTTTATCTACAGCAAATGTTGATGCACAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACAATCTGTGATTGTTGGAAGTGGTCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACCGGGACCGTGCAGCTGAGAGGAGGAGTTTATATGGCTCATCATCTTCAGTTGGAAATGATTTAGCTGACCTTGAAATTGGCGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCCATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGCCAACCTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAAGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGAGAGTTAA | 3201 | 0.4474 | MDPGRYALHQGWDNNSALEGYSTVHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFPRDILDREAYLPPGPPVGHWSQTKRRGYDEDYPLDRESRRFQRPYHESYDQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHDRDDYAYDDDYDYKSRASSHHRREDSHERDHDHGRHSYDSDYERSSRRDSNWRRRKSRDRERVKSGHSRERDLSPHRRHERSHSHSHSRSRSCSRSRSPSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRLWEHYSVAPSATVVVKGLSQKTTEEDLYQILAECGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSMMVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDAKQSTGPEQTGAEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKASNESEPSKVSDGSGSKKVISAPATAVAPVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHYAKNKLKNETMVRESNASNPGSHTTLAQSAAIDSQAQPQPVSNSLGGTVMGVIRGSGRGVVKADTYSGSTSVASSMPSLSTANVDAQTVATPFRTDVSALGSYTQSVIVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDANLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES* | 1067 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso16g0844 | 1066 | SMART | G-patch_5 | 986 | 1032 | IPR000467 | GO:0003676 | |
Gso16g0844 | 1066 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 314 | 373 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 471 | 537 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
Gso16g0844 | 1066 | PANTHER | FI21118P1 | 222 | 1063 | - | - | |
Gso16g0844 | 1066 | PANTHER | FI21118P1 | 38 | 219 | - | - | |
Gso16g0844 | 1066 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 312 | 392 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | SMART | zf_4 | 416 | 440 | IPR001876 | - | |
Gso16g0844 | 1066 | CDD | RRM1_RRM2_RBM5_like | 310 | 390 | - | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 229 | 247 | - | - | |
Gso16g0844 | 1066 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 469 | 549 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | SUPERFAMILY | RNA-binding domain, RBD | 467 | 556 | IPR035979 | GO:0003676 | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 66 | 99 | - | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 212 | 228 | - | - | |
Gso16g0844 | 1066 | CDD | RRM1_RRM2_RBM5_like | 467 | 547 | - | - | |
Gso16g0844 | 1066 | Gene3D | - | 297 | 400 | IPR012677 | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 130 | 297 | - | - | |
Gso16g0844 | 1066 | PANTHER | RNA-BINDING PROTEIN | 222 | 1063 | - | - | |
Gso16g0844 | 1066 | PANTHER | RNA-BINDING PROTEIN | 38 | 219 | - | - | |
Gso16g0844 | 1066 | SUPERFAMILY | RNA-binding domain, RBD | 307 | 406 | IPR035979 | GO:0003676 | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 255 | 297 | - | - | |
Gso16g0844 | 1066 | Pfam | G-patch domain | 989 | 1030 | IPR000467 | GO:0003676 | |
Gso16g0844 | 1066 | Pfam | OCRE domain | 611 | 659 | IPR041591 | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 663 | 684 | - | - | |
Gso16g0844 | 1066 | ProSitePatterns | Zinc finger RanBP2-type signature. | 418 | 437 | IPR001876 | - | |
Gso16g0844 | 1066 | ProSiteProfiles | G-patch domain profile. | 988 | 1034 | IPR000467 | GO:0003676 | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 793 | 825 | - | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 138 | 205 | - | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 896 | 918 | - | - | |
Gso16g0844 | 1066 | SMART | rrm1_1 | 470 | 545 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | SMART | rrm1_1 | 313 | 388 | IPR000504 | GO:0003723 | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 756 | 825 | - | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 587 | 609 | - | - | |
Gso16g0844 | 1066 | Gene3D | - | 406 | 444 | - | - | |
Gso16g0844 | 1066 | CDD | OCRE_SUA_like | 608 | 660 | IPR035623 | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 663 | 682 | - | - | |
Gso16g0844 | 1066 | SUPERFAMILY | Ran binding protein zinc finger-like | 408 | 444 | IPR036443 | - | |
Gso16g0844 | 1066 | MobiDBLite | consensus disorder prediction | 756 | 786 | - | - | |
Gso16g0844 | 1066 | Gene3D | - | 453 | 582 | IPR012677 | - | |
Gso16g0844 | 1066 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 414 | 443 | IPR001876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso16g0844 | Gso-Chr16 | 20570479 | 20578930 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso16g0844 | 311 | 533 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 25.200 | 4.74e-09 | 58.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso16g0844 | K13094 | - | gmx:100777686 | 1893.63 |