Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0844 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACAGCACCGTCCATGACCCCAACTTCCGGGTTGGCGGTTCCTATGATGAGAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCCGTTTACCAGAGAAATAATTTCCCCCGTGACATTTTGGATAGGGAGGCTTATCTGCCGCCAGGACCTCCTGTTGGCCACTGGAGTCAAACCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATGATCAGATTGATGGTTTCAGGGATCGTGAGATTGACACCTATCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATGATTATGACTACAAGTCCCGAGCATCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATCATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAAGTAGTAGAAGAGATAGTAATTGGAGGCGACGCAAATCACGTGATCGGGAACGAGTTAAGAGTGGTCATAGTCGGGAAAGAGATCTGAGTCCGCATAGGAGACATGAGCGTTCTCATTCACATTCACATTCTCGTTCTCGATCTTGTTCACGTTCTCGATCCCCGTCTCATTCCCATTCCCGGTCTCAATCTCGTGGATATGATGACCATCCAAGATCTAGGTCCCCCCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCTGTGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTGGGAGCTGCCCAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATGATGGTTCCATCCGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCCCCTGCAGCAGATATTTCATTGTCTAATTCAGCAGCTATAGGAAAGAAAGGTTCAGAAGCAGGTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATCGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAACCCAGATGCCAAACAATCTACTGGTCCAGAGCAAACTGGTGCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAATGAGTCTGAACCTTCTAAGGTATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTGCTGTTGCACCGGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATACTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAACAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTATGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCAGGAAGTCACACAACTCTTGCCCAGAGTGCTGCTATTGATTCTCAGGCACAGCCACAGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAAGCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAAGTTTATCTACAGCAAATGTTGATGCACAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACAATCTGTGATTGTTGGAAGTGGTCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACCGGGACCGTGCAGCTGAGAGGAGGAGTTTATATGGCTCATCATCTTCAGTTGGAAATGATTTAGCTGACCTTGAAATTGGCGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCCATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGCCAACCTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAAGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGAGAGTTAA 3201 0.4474 MDPGRYALHQGWDNNSALEGYSTVHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFPRDILDREAYLPPGPPVGHWSQTKRRGYDEDYPLDRESRRFQRPYHESYDQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHDRDDYAYDDDYDYKSRASSHHRREDSHERDHDHGRHSYDSDYERSSRRDSNWRRRKSRDRERVKSGHSRERDLSPHRRHERSHSHSHSRSRSCSRSRSPSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRLWEHYSVAPSATVVVKGLSQKTTEEDLYQILAECGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSMMVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDAKQSTGPEQTGAEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKASNESEPSKVSDGSGSKKVISAPATAVAPVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHYAKNKLKNETMVRESNASNPGSHTTLAQSAAIDSQAQPQPVSNSLGGTVMGVIRGSGRGVVKADTYSGSTSVASSMPSLSTANVDAQTVATPFRTDVSALGSYTQSVIVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDANLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0844 1066 SMART G-patch_5 986 1032 IPR000467 GO:0003676
Gso16g0844 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 373 IPR000504 GO:0003723
Gso16g0844 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Gso16g0844 1066 MobiDBLite consensus disorder prediction 79 99 - -
Gso16g0844 1066 PANTHER FI21118P1 222 1063 - -
Gso16g0844 1066 PANTHER FI21118P1 38 219 - -
Gso16g0844 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 392 IPR000504 GO:0003723
Gso16g0844 1066 SMART zf_4 416 440 IPR001876 -
Gso16g0844 1066 CDD RRM1_RRM2_RBM5_like 310 390 - -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 229 247 - -
Gso16g0844 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Gso16g0844 1066 SUPERFAMILY RNA-binding domain, RBD 467 556 IPR035979 GO:0003676
Gso16g0844 1066 MobiDBLite consensus disorder prediction 66 99 - -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 212 228 - -
Gso16g0844 1066 CDD RRM1_RRM2_RBM5_like 467 547 - -
Gso16g0844 1066 Gene3D - 297 400 IPR012677 -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 130 297 - -
Gso16g0844 1066 PANTHER RNA-BINDING PROTEIN 222 1063 - -
Gso16g0844 1066 PANTHER RNA-BINDING PROTEIN 38 219 - -
Gso16g0844 1066 SUPERFAMILY RNA-binding domain, RBD 307 406 IPR035979 GO:0003676
Gso16g0844 1066 MobiDBLite consensus disorder prediction 255 297 - -
Gso16g0844 1066 Pfam G-patch domain 989 1030 IPR000467 GO:0003676
Gso16g0844 1066 Pfam OCRE domain 611 659 IPR041591 -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 663 684 - -
Gso16g0844 1066 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Gso16g0844 1066 ProSiteProfiles G-patch domain profile. 988 1034 IPR000467 GO:0003676
Gso16g0844 1066 MobiDBLite consensus disorder prediction 793 825 - -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 138 205 - -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 896 918 - -
Gso16g0844 1066 SMART rrm1_1 470 545 IPR000504 GO:0003723
Gso16g0844 1066 SMART rrm1_1 313 388 IPR000504 GO:0003723
Gso16g0844 1066 MobiDBLite consensus disorder prediction 756 825 - -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 587 609 - -
Gso16g0844 1066 Gene3D - 406 444 - -
Gso16g0844 1066 CDD OCRE_SUA_like 608 660 IPR035623 -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 663 682 - -
Gso16g0844 1066 SUPERFAMILY Ran binding protein zinc finger-like 408 444 IPR036443 -
Gso16g0844 1066 MobiDBLite consensus disorder prediction 756 786 - -
Gso16g0844 1066 Gene3D - 453 582 IPR012677 -
Gso16g0844 1066 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0844 Gso-Chr16 20570479 20578930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0844 311 533 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 4.74e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0844 K13094 - gmx:100777686 1893.63