Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0843 ATGGAAAAAGACCAAGAGGCTCAGCATCATAGGGAAAATCAAGGGTCTTTGGTTACTACCGTGAAAGTAGAAGGGTCAGAGGCTGTTAACAACAATGAGCATCGTTCTTGGGTGTGTCATATCTGCAAGAAAGGGTTCGGCTCAGGTAAAGCACTTGGTGGACACATGAGAATACACAACCTTTCCAAGAAGCAGCAGGTTCATAGGGCTAAACAAGGCACTACTATTGTTGCAAAGCCCAAAACCAACAAATGGGTGTTTGTGAGTGGCAACCCCACTTGTTCTCTTTGTGGAAAGAGCTTTTCTTCCATGAAGTCCTTGTTCGGGCACTTGAGGTCTCACCCTGAGAGGATGAGGAAGGGGATTCAAAACAACACTCCTTCAATCAATGGTGCATCCTCCAATTCCACATCTTCATCAACCCTTTCTGATGACTCTACTGCTGTTGATCTCTCCCAAGCTCTCAGGGGTTGTTGGTCTGTCTCTGCCAAGAGAGGCCGCAGAAGCCCTTCTTGTAGCAAGTCAAATTCTGGTTTAGAAGATGATGGGGAAATTGAGCCACGTATGCAAGAGGCTGTGTATAACCTCATGTTGCTGGCAAGTGGGAATCCCAAGCGGGAGGAAGAGCTTGACGGTGATCAGATTGAAGAGAAGAAGCTGTTAAACCCAGTTTTTGGGGATTCTGATGAGATGAAGAGAGATAGAAAGAGAGTGACAAAGAAAATGAAATTAACAGAATTAGAAGCAGCTGAGGAGGGGGACAAGCTATGCAGAATATGCAATACAACTTTCCCAAGTCCCCAAGTTTTAGAGGGTCATCTATGCAGCAGCAAAATTTTTAAGAACATTCAAGTCATGGATGAATCTGAATCAGATGGTGTGTTAGCCACAAAAGAGGAGCATCATGCCAAAAAACCAACCATGCAAGGAGAGGAAACAACTGTTCTTGGGGGTAATGCTGTGGAAGCCATTAGAGGGTATCATTGTAAAATTTTCATCAAGACTTTCTCAACTGGTCAGGTCTTTGGGGACCACAAGATATCTAATTGGACCAGCACGGCAGAAGCTCAGTCATCAGCTCAAGCAACTTCCTCACCTGTGGGAAATGCTCAGAATTGTTCCAAGATTTTGACTTTTGATCTTAATCAGCTTCCTGCTATGGATGGACAAGATGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATTGTGACATCATTCAGTTATGGTTCCTCCTCCTAA 1242 0.442 MEKDQEAQHHRENQGSLVTTVKVEGSEAVNNNEHRSWVCHICKKGFGSGKALGGHMRIHNLSKKQQVHRAKQGTTIVAKPKTNKWVFVSGNPTCSLCGKSFSSMKSLFGHLRSHPERMRKGIQNNTPSINGASSNSTSSSTLSDDSTAVDLSQALRGCWSVSAKRGRRSPSCSKSNSGLEDDGEIEPRMQEAVYNLMLLASGNPKREEELDGDQIEEKKLLNPVFGDSDEMKRDRKRVTKKMKLTELEAAEEGDKLCRICNTTFPSPQVLEGHLCSSKIFKNIQVMDESESDGVLATKEEHHAKKPTMQGEETTVLGGNAVEAIRGYHCKIFIKTFSTGQVFGDHKISNWTSTAEAQSSAQATSSPVGNAQNCSKILTFDLNQLPAMDGQDGVQSDLFIPANIVTSFSYGSSS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0843 413 Pfam Zinc-finger of C2H2 type 257 278 - -
Gso16g0843 413 Pfam C2H2-type zinc finger 38 59 - -
Gso16g0843 413 Pfam C2H2-type zinc finger 94 116 - -
Gso16g0843 413 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 324 388 - -
Gso16g0843 413 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 2 304 - -
Gso16g0843 413 SUPERFAMILY beta-beta-alpha zinc fingers 36 114 IPR036236 -
Gso16g0843 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Gso16g0843 413 MobiDBLite consensus disorder prediction 164 186 - -
Gso16g0843 413 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Gso16g0843 413 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 304 IPR044653 GO:0003700
Gso16g0843 413 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 324 388 IPR044653 GO:0003700
Gso16g0843 413 SMART c2h2final6 92 114 IPR013087 -
Gso16g0843 413 SMART c2h2final6 37 59 IPR013087 -
Gso16g0843 413 MobiDBLite consensus disorder prediction 120 145 - -
Gso16g0843 413 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gso16g0843 413 Gene3D Classic Zinc Finger 4 118 - -
Gso16g0843 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0843 Gso-Chr16 20480770 20482985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0843 35 128 C2H2 Transcription Factor Family AT2G26940 40.367 4.95e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso16g0843 zf-C2H2_6 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0843 - - gmx:102667003 808.52