Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0841 ATGACAATCTTCTGTGTGTTGCTCTTTCTGGGACTCTTGTGGGCTGAAATTCATGTGATTTCTTCATTCACTGATACTCAAGACGTTGTTGCACTTAGATCATTGAAAGATGTATGGCAAAATACACCACCCAGCTGGGACAAGGCAGATGACCCCTGTGGAGCACCCTGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTGGGACTGTCAACCATGGGCCTGAAGGGTAAATTAACTGGAGATATTGGTCAACTTACAGAATTGAGATCCTTGGACTTGTCCTTTAATAGAGGTTTAACAGGTCCTCTCTCCCCACAGTTAGGAGACCTCAGCAATCTAAATATTTTGATTTTGGCTGGTTGCAGTTTCGGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGCTATCTTTCCTGGCTTTAAATTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAAACTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGACCTATCCCAGTTTCAACCTCCACCACCCCTGGATTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAACAAGAACCAGCTTTCAGGTTCCATTCCCCCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTATTTGATGGAAATAATTTAAGTGGGACTATACCTTCAACACTAGTACTAGTTAAGAGCGTTGAGGTTCTTCGGCTTGATAGGAATTTCCTGACAGGAGAGGTTCCATCAGATCTCAACAACCTTACAAACATCAATGAATTGAATTTAGCACATAACAAATTCACAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATGCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCTTATTATGGAGTTTGGATCCCTTCAAGGTACTCTTCCATCAAAACTCTTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATGCATTGAACAATACATTGGACATGGGTGACAACATTTGTCCCCAATTGCAGCTTGTAGATTTGCAAGACAATGAGATTTCCTCAGTGACACTCCGTTCACAATACAAAAATATATTGATTCTTATAGGAAATCCAGTGTGTGGTACTGCTCTGTCAAATACAAATTTCTGCCAACTTCAGCAGCAGGCTAAGCAACCCTATTCCACAAGCTTGGCTAGTTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGTCCCCAAAGTTGTGAATGTGCCTATCCATATGAAGGAACGTTGTACTTTAGAGGACCCTCATTCAGAGAACTGTCCAGTGTAAATACTTTTCATTCACTTGAAATGAGCTTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCAATAGTGATGATTATCTTCAAGTGCAACTAGCACTCTTTCCACCAATGGGGCAATATTTTAACAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTGAGTAATCAAACTTACAAGCCCCCAAAAGAATTTGGACCCTATTACTTTATTGCTTTTCCTTATCCTTTTCCAGGTTCCCACAAAGGAGCTTCTCTTAGCAAAGGTGTTGTTATTGGGATATCAATTGGCTGCATAATTCTGGTTCTAAGCCTCATAGGGTTAGCTATATACGCAATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATTGGATTAAGTAGACCATTCGCATCATGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAGCTTAAAAAGTGCTCCAACAATTTCTCTGAAAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGGTGTACAAAGGGGTTTTCCCTGATGGGAAAATAGTTGCAATCAAACGAGCTCAGCAAGGATCAATGCAAGGAGGCGTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTCCACCACAAGAATCTTGTTGGCCTTGTTGGATTCTGTTTTGAACAAGGGGAACAAATGTTGGTTTACGAATTTATGCCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGAGATTCATCTTGACTGGAAGAGGAGACTCCGTGTTGCTCTTGGTTCATCCAGAGGACTTGCATACTTACATGAGCTTGCCAACCCTCCCATAATCCACAGAGACGTGAAGTCCACTAATATCTTGCTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGTTTGTCTAAGCTTGTCTCAGACAGTGAGAAAGGCCATGTTTCAACTCAGGTTAAAGGGACATTGGGTTATCTGGATCCCGAGTATTACATGACGCAACAACTCACAGAGAAGAGTGATGTGTACAGTTTTGGGGTAGTCATGCTTGAACTAATAACTTCAAGACAACCAATAGAGAAGGGTAAGTACATTGTCCGTGAGGTGCGCACCCTGATGAATAAGAAGGACGAAGAACACTATGGTTTGAGGGAACTCATGGATCCAGTGGTAAGGAACACACCAAACCTCATAGGATTTGGGAGGTTCTTGGAGCTGGCAATTCAATGCGTTGAGGAATCAGCCACAGACCGTCCTACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACATCTGCATCCTCTTCTGCCACTGACTTTGGAGTTGGTAAGGGTGGAATGAGGCATCCCTACATTGATTGTACTTTCACTAAGAAGGACAATGCTAATGATAGTAGTAGTAGTGCCTTTGACTACAGCGGGGGGTACACACTTTCAACAAAAGTCGAACCAAAATAG 2904 0.4215 MTIFCVLLFLGLLWAEIHVISSFTDTQDVVALRSLKDVWQNTPPSWDKADDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLTGDIGQLTELRSLDLSFNRGLTGPLSPQLGDLSNLNILILAGCSFGGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLTGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVLVKSVEVLRLDRNFLTGEVPSDLNNLTNINELNLAHNKFTGPLPDLTGMDTLNYVDLSNNSFDASDAPTWFTILPSLTTLIMEFGSLQGTLPSKLFDIPQIQQVKLRNNALNNTLDMGDNICPQLQLVDLQDNEISSVTLRSQYKNILILIGNPVCGTALSNTNFCQLQQQAKQPYSTSLASCGGKSCPPDQKLSPQSCECAYPYEGTLYFRGPSFRELSSVNTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPMGQYFNRSEVQRIGFELSNQTYKPPKEFGPYYFIAFPYPFPGSHKGASLSKGVVIGISIGCIILVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCSNNFSESNEIGFGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGVEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGRSEIHLDWKRRLRVALGSSRGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTPNLIGFGRFLELAIQCVEESATDRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVGKGGMRHPYIDCTFTKKDNANDSSSSAFDYSGGYTLSTKVEPK* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0841 967 Pfam Protein tyrosine and serine/threonine kinase 632 899 IPR001245 GO:0004672|GO:0006468
Gso16g0841 967 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Gso16g0841 967 SMART serkin_6 629 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0841 967 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 935 - -
Gso16g0841 967 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Gso16g0841 967 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Gso16g0841 967 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0841 967 Gene3D Ribonuclease Inhibitor 285 426 IPR032675 -
Gso16g0841 967 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Gso16g0841 967 SUPERFAMILY Protein kinase-like (PK-like) 615 910 IPR011009 -
Gso16g0841 967 CDD STKc_IRAK 635 902 - -
Gso16g0841 967 MobiDBLite consensus disorder prediction 945 967 - -
Gso16g0841 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Gso16g0841 967 PANTHER LRR RECEPTOR-LIKE KINASE 1 935 - -
Gso16g0841 967 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Gso16g0841 967 Gene3D Transferase(Phosphotransferase) domain 1 705 922 - -
Gso16g0841 967 SUPERFAMILY L domain-like 46 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0841 Gso-Chr16 20394878 20401929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0841 19 967 Receptor kinase-like Gene Family AT1G79620 72.319 0.0 1437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso16g0841 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0841 - - gmx:100792249 1866.66