Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso16g0834 | ATGGCTGCTCCAAAAGTGAACGAAAAGTTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCACGAGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATCATTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACATTGATATAGAGTCCACTGAATCATTCCCTATCACAGAAGAAATGAGAATGAAAGCACAGAGTTTAAGGGTACAAGAGCGCAAAAGGAAAGAGGAGGAAGAGAAAAGATTGGAGAGAGAACGGGAGAAGGAGAGGATTCAAGCTGGTAAGAGACTCCTTGAGGCTAAGCGAATTGCGGAAGAAAATGAAAGAAAACGGAATCTAGCATTGAAAAAAGCAGAAAAAGAAGAAGAGAAAAGAGCTAGAGAAAAAGTTCTCAAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTATAAACAAGGATTGCCTTTAGAAGGCCAAGCAGCTGTGAGATCTTCTGCTATTGAAATAGAACAAGAAAAGAAGTCAAAGTCTGTTTATAATACAACAGCAAAAGCTGAACAGTTAAGAGAATGTCTGAGGAATCTCAAGCGTAACCATCAGGGTGAGGATGCCAGAGTCAGAAGGGCCTTTCAAACAATTTTAGTCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGACAAGTACAGGAAAATTCGACTGAATAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTGTGTGGTTTTGAGAGAACGGGTGACTTCTTGTATCTTCCTGATGAAAAGGTTGACATGGCACTGTTAAATTCAGCTGGTTTGGTCCTAAATTCTGCAATGACAAATCCTTTCTTTGGAGTTTTAAGTTCTACTCACAATTGA | 933 | 0.3944 | MAAPKVNEKLLEDLEVMGFPKARATRALHYSGNTSLEDAINWIIDHENDIDIDEMPLVDVDIDIESTESFPITEEMRMKAQSLRVQERKRKEEEEKRLEREREKERIQAGKRLLEAKRIAEENERKRNLALKKAEKEEEKRAREKVLKKLEQDKLNRRYKQGLPLEGQAAVRSSAIEIEQEKKSKSVYNTTAKAEQLRECLRNLKRNHQGEDARVRRAFQTILVYVGNVAKNPKEDKYRKIRLNNPLFQDRVGSLNGGVEFLELCGFERTGDFLYLPDEKVDMALLNSAGLVLNSAMTNPFFGVLSSTHN* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso16g0834 | 310 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Gso16g0834 | 310 | Coils | Coil | 194 | 214 | - | - | |
| Gso16g0834 | 310 | CDD | UBA_PUB_plant | 6 | 53 | - | - | |
| Gso16g0834 | 310 | SUPERFAMILY | PUG domain-like | 194 | 301 | IPR036339 | - | |
| Gso16g0834 | 310 | Gene3D | - | 8 | 53 | - | - | |
| Gso16g0834 | 310 | SMART | PGNneu | 217 | 278 | - | - | |
| Gso16g0834 | 310 | PANTHER | F13M7.16 PROTEIN | 1 | 307 | - | - | |
| Gso16g0834 | 310 | Coils | Coil | 119 | 156 | - | - | |
| Gso16g0834 | 310 | Coils | Coil | 83 | 108 | - | - | |
| Gso16g0834 | 310 | SUPERFAMILY | UBA-like | 4 | 57 | IPR009060 | GO:0005515 | |
| Gso16g0834 | 310 | Pfam | UBA/TS-N domain | 7 | 43 | IPR015940 | - | |
| Gso16g0834 | 310 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 307 | - | - | |
| Gso16g0834 | 310 | Pfam | PUB domain | 214 | 282 | IPR018997 | - | |
| Gso16g0834 | 310 | CDD | PUB_UBA_plant | 201 | 305 | - | - | |
| Gso16g0834 | 310 | Gene3D | - | 198 | 295 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso16g0834 | Gso-Chr16 | 20022641 | 20031679 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso16g0834 | 1 | 305 | C2H2 Transcription Factor Family | AT1G04850 | 60.390 | 4.46e-103 | 303 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso16g0834 | - | K24348 | gmx:100781260 | 541.962 |