Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0829 ATGTCTCGCTCCGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTGCTTCTGGTGGCCACTGAGATGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCACCGTTTCAAGGGGCCATGTTTGAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAACGTTTCACTGGAGGACACTGCCGTGGCTTCCGTCGCAGATGCTTCTGCACCAAACATTGTTAA 240 0.5167 MSRSVPLVSTIFVLLLLLVATEMMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTERFTGGHCRGFRRRCFCTKHC* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0829 79 PANTHER DEFENSIN-LIKE PROTEIN P322 1 79 - -
Gso16g0829 79 Pfam Gamma-thionin family 33 79 - -
Gso16g0829 79 PANTHER DEFENSIN-LIKE PROTEIN 1 1 79 - -
Gso16g0829 79 SUPERFAMILY Scorpion toxin-like 33 79 IPR036574 -
Gso16g0829 79 PRINTS Purothionin signature 34 49 IPR008176 GO:0006952
Gso16g0829 79 PRINTS Purothionin signature 64 78 IPR008176 GO:0006952
Gso16g0829 79 ProSitePatterns Gamma-thionins family signature. 33 56 IPR008176 GO:0006952
Gso16g0829 79 Gene3D - 33 79 IPR036574 -
Gso16g0829 79 SMART gth_4 34 79 IPR003614 GO:0006952
Gso16g0829 79 CDD Knot1 44 76 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0829 Gso-Chr16 19781495 19782627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0829 1 79 Plant Defensins Gene Families AT2G02100 60.759 4.62e-30 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0829 - - gmx:547843 149.443