Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0828 ATGATGGATTCTGTTCTCCCCGATACTTCCACTAATGCCATTGCCTCTTCTACACCCACTTCACACCCTCATTCCCAACCCTCACTCCCACAAACCCTCTTAGTCCCCAAACCCGAACCCTTCTGGGATACCCACATCGAAACCTCCGACGAACTCGACCTCTACTCCGAGTTCAATCGCGTCACTGAGCTCTTTCACTTCGCCTTCGGAGCCACCAACGTTGTCGACCCTTTCGGAGCCACCAATGTTGCATGCCCCGAACAGACTCCGCTGGTTCCTGTTCCTCAGGAGCTCGATTCAGCGGCCCAGCCCGACCCGAATTCGCCCTCCGAGGACGTCTTGCGAGCGATCGTTCCGGTACCGCCGGAGCAGCAGGACGGCGCGGTGGCCACCGCCACCGTGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGAGAGTGATGGATCTGTCTCCGAGGGACGAGGCTCATTTGCGCGAGACCGTGAGGAGGACAAGGCTCATATACGACTCGCTGCGAGTGTTGACCTCCGTGGAGGAGGAGAAGCGAGTCGCCTCAGTGGCAGCGGCGGCGGTGGCAGCAGCAGCAGCAGTGACAACACTAGAGGGCTGTCTGCCGGTGGATGGCTCCACCGGCAAGTTGCGGCGTCTCCGGGGAGACCTGCGGGCTGCCAGCCTGATGAGAGAGCGTGGACTGTGGCTGAACCGTGACAAGAGGATCGTCGGGGCGATCCCCGGAATTATGGTTGGGGATTTGTTCCTTTTTCGGATGGAGTTGTGTGTGGTTGGATTGCACGGTCAGATACAGGCTGGAATAGATTTTCTTCCTGCAAGCATGAGTTCCACTGGAGAACCTATTGCTACCAGTGTCATTGTTTCTGGTGGCTATGAGGATGACATGGATGATGGTGAGGTTATAGTTTACACTGGCCATGGAGGGCAGGAGAAGAATTCCTCCAGGCAGATCTCTCATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTAAGGGTTATCCGTGGGATGAAGTATGAGGGGAGTGCTGCTGGGTCTGGTAAGGTGTATGTGTATGATGGGGTGTATAGGATTGTTGATTGCTGGTTTGATGTGGGGAGGTCGGGTTTTGGGGTTTATAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAAGATGGGTAGTGCTATTTTGAAGGAAGCTAGGAATGTTAGGAGGAGTGAGCTGGATTTGAATCCCACATCTGCTGATATGGCTAACAGGAAGGAGAATGTTGCAGTTCGGCTTTTTAATGACTTTGATGATGATCGGGGTCCTCTTTGCTATGAATATCTTGTGAGGACTTGTTTTCCGAAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGCTGTGACTGTGTGGATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGAGTTTCCTTACACTCTGCAGGGGCATCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCATTTTGCTCCTGTCCTCCTCATTGTCGCAATCGTGTTGCGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCTAAGCAGACATCTTGGGGAGTAAGGTCCTTGGACCTTATTCAAGCTGGTTCTTTTATCTGTGAGTTTGCAGGGGTTGTTTTGACCAGGGAGCAAGCTCAACTCTTAACAATGAATGGTGATTCATTGATATATCCTAATCGGTTTTCGGAAAGGTGGGCAGAATGGGGGGATTTGTCTCAGATATACCCGGATTATGTGCGTCCATTGTATCCGTCAATTCCTCCTCTAGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTCTTGGTTCAGTTTGTTCTGCATGATCACAACAATTTGATGTTCCCACACCTTATGCTATTTGCCATGGAAAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAACTCTCTATATGTAACTGA 2061 0.5095 MMDSVLPDTSTNAIASSTPTSHPHSQPSLPQTLLVPKPEPFWDTHIETSDELDLYSEFNRVTELFHFAFGATNVVDPFGATNVACPEQTPLVPVPQELDSAAQPDPNSPSEDVLRAIVPVPPEQQDGAVATATVPRRKQSRQKELVRVMDLSPRDEAHLRETVRRTRLIYDSLRVLTSVEEEKRVASVAAAAVAAAAAVTTLEGCLPVDGSTGKLRRLRGDLRAASLMRERGLWLNRDKRIVGAIPGIMVGDLFLFRMELCVVGLHGQIQAGIDFLPASMSSTGEPIATSVIVSGGYEDDMDDGEVIVYTGHGGQEKNSSRQISHQKLESGNLALERSMHYGVEVRVIRGMKYEGSAAGSGKVYVYDGVYRIVDCWFDVGRSGFGVYKFKLWRIEGQAKMGSAILKEARNVRRSELDLNPTSADMANRKENVAVRLFNDFDDDRGPLCYEYLVRTCFPKFVFHQSGKATGCDCVDGCGDGCFCAMKNGGEFPYTLQGHLVRGKPLIFECGPFCSCPPHCRNRVAQKGLKYRLEVFRSKQTSWGVRSLDLIQAGSFICEFAGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQIYPDYVRPLYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLHDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0828 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 30 683 - -
Gso16g0828 686 Pfam SET domain 542 673 IPR001214 GO:0005515
Gso16g0828 686 SUPERFAMILY SET domain 431 684 IPR046341 -
Gso16g0828 686 ProSiteProfiles Pre-SET domain profile. 469 527 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g0828 686 MobiDBLite consensus disorder prediction 1 33 - -
Gso16g0828 686 SMART set_7 530 679 IPR001214 GO:0005515
Gso16g0828 686 SUPERFAMILY PUA domain-like 224 409 IPR015947 -
Gso16g0828 686 Pfam SAD/SRA domain 242 397 IPR003105 -
Gso16g0828 686 SMART preset_2 422 514 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g0828 686 Pfam Pre-SET motif 426 522 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g0828 686 SMART G9a_1 238 397 IPR003105 -
Gso16g0828 686 MobiDBLite consensus disorder prediction 1 32 - -
Gso16g0828 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 44 686 IPR025794 GO:0016571
Gso16g0828 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 30 683 - -
Gso16g0828 686 Gene3D - 240 402 IPR036987 -
Gso16g0828 686 Gene3D SET domain 403 686 IPR046341 -
Gso16g0828 686 ProSiteProfiles YDG domain profile. 243 393 IPR003105 -
Gso16g0828 686 ProSiteProfiles SET domain profile. 530 673 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0828 Gso-Chr16 19735366 19742234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0828 126 675 Su(var)3-9 homologs AT5G04940 34.555 3.82e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso16g0828 SAD_SRA 2.8e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0828 K11420 - gmx:100785015 1361.28