Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0800 ATGTCAGCCCCTTCTCCATCCTCGTCACCGGCGCCACCACCAGAACTCTCTTCCTCTGCACCTCCCAGTTCAACTTCACCATTACCGTTACCCTCACCGTCTCCATCCCTATCTCCAGCCAATCCTCTGCCGGCACCACCACCACAATCGCCGGCATCAATTTCTTCTCCTCCAGCAACCCTGCCACCTCCTCATAGTTCCTCTCCTTCTCCACCATCTACTACAACTATAAGTAGTAGTGCACCTCCTCCTCCTCCTACTACTAGGAAAAATCCTTTTGATTCTCATCATTCTACTCCATCACACACTTCTGGATTGGCTCCCCCACCTCCATCAGCACAAAATTCTGGCCCGGGAAGCAGTAGTGGAACTAGTGCAGTGGCTATTGTTGGTGTACTGACAGGAGTTCTGCTGCTTGGCTTCATTGGCATTGCTATCTGGTGTCTGAGGAGGCAAAAGGAAAGGGTTTCTAAGAGTGGTGCTTATGACTTGCCACCTGAATCAGATATGCCTTTACATAAGATTCGTTCTTCAGCTCCTCTAATAGAAAGAGCTTCCGGCGGTAATACACCATCAGGACTAGGCAACTCTAGGACATTGTTTGCATATGAAGAGCTACTGAAGGCCACAAACGATTTTTCAACTAAAAATCTCTTGGGAGAAGGAGGATTTGGTTGTGTGTATAAAGGATCACTTCCAGATGGGAGAGAAGTAGCAGTCAAACAGCTGAAAATTGAAGGAAGCAAGGGTGAGAGAGAATTCAAAGCTGAAGTGGAAATCATTAGCCGCATTCATCATCGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGGGGAAGGTAGGCCAGTGCTGGACTGGACAAAACGTGTTAAAATTGCGGCTGGGGCAGCCAGAGGAATAGCTTATCTCCATGAAGACTGCAATCCACGGATTATTCACAGGGATATCAAGTCAGCAAATATTCTTTTACACTACAACTTTGAAGCTCGAATCTCGGATTTTGGGCTAGCCAAATTAGCAGTTGATGCTAATACACATGTAACCACACGTGTGGTGGGAACTTTCGGATATGTTGCGCCGGAATATGTATCAAGTGGTAAATTCACTGAGAAGTCAGATGTGTACTCTTTTGGAGTCATGCTTTTGGAGCTCATTACAGGAAGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTGACCGATGCACTGGATAGTGAGGAATTTGAGAGTTTGACAGATCCAAAGCTCGGAAAGAACTACGTTGAAAGCGAAATGATTTGCATGCTTGAAGTTGCTGCTGCTTGCGTGCGATATTCGTCTGCCAAAAGACCTCGAATGGGACAGGTTGTTAGAGCTTTGGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATGAGAATTGGGGACTCTGCACTCCAATCCGCAGAAATAAGATTATTTCGTAGGATGGCATTTGGAATTCAAGATTATAACTCCGACTTTTTAAGCCCCAGAGAGTAA 1599 0.4528 MSAPSPSSSPAPPPELSSSAPPSSTSPLPLPSPSPSLSPANPLPAPPPQSPASISSPPATLPPPHSSSPSPPSTTTISSSAPPPPPTTRKNPFDSHHSTPSHTSGLAPPPPSAQNSGPGSSSGTSAVAIVGVLTGVLLLGFIGIAIWCLRRQKERVSKSGAYDLPPESDMPLHKIRSSAPLIERASGGNTPSGLGNSRTLFAYEELLKATNDFSTKNLLGEGGFGCVYKGSLPDGREVAVKQLKIEGSKGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNDTLYFHLHGEGRPVLDWTKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSANILLHYNFEARISDFGLAKLAVDANTHVTTRVVGTFGYVAPEYVSSGKFTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLVEWARPLLTDALDSEEFESLTDPKLGKNYVESEMICMLEVAAACVRYSSAKRPRMGQVVRALDSLATCDLSNGMRIGDSALQSAEIRLFRRMAFGIQDYNSDFLSPRE* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0800 532 CDD STKc_IRAK 219 489 - -
Gso16g0800 532 ProSiteProfiles Protein kinase domain profile. 213 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0800 532 MobiDBLite consensus disorder prediction 1 90 - -
Gso16g0800 532 ProSitePatterns Protein kinases ATP-binding region signature. 219 241 IPR017441 GO:0005524
Gso16g0800 532 MobiDBLite consensus disorder prediction 1 123 - -
Gso16g0800 532 SMART serkin_6 213 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0800 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Gso16g0800 532 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 16 526 - -
Gso16g0800 532 Gene3D Transferase(Phosphotransferase) domain 1 289 499 - -
Gso16g0800 532 Pfam Protein kinase domain 214 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0800 532 Gene3D Phosphorylase Kinase; domain 1 185 288 - -
Gso16g0800 532 PANTHER BNACNNG34790D PROTEIN 16 526 - -
Gso16g0800 532 SUPERFAMILY Protein kinase-like (PK-like) 194 486 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0800 Gso-Chr16 18663318 18672530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0800 115 528 Trihelix Transcription Factor Family AT5G38560 61.644 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso16g0800 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0800 - - gmx:100799296 885.56