Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0798 ATGGCGACGCTGCTAAGAAAACTGTGCGAATCGGCGACGATGAAGCGATCCGGCTCTCACTCTCACCCTCACCCTCTCCCGTCCTCGGAACAAGCACGCCCATCCTCCCCTCTTGGCGCCTTCGACCCTCTCCCTGCCGACATCCTCATGCAAATCGTCCGCCTCTTAGGCCCCAAACACGCTGCCAGACTCTGCCTCGTTTCCAAGTCTTGGCGGTCACTCGTCTCCGACAACGCCCTCTGGGCCCACTTCCTCCAAACCCACCACCCCCACTCCCCGCTCTTCGCCGAAACCGCCCTCAGCTCCGGCTACCCTCTCCCGACCTTGCCTGCTCAGAATTCACCACGTGTCTCGTTCCAGCATGCTTACGCGCTGCGTGAACGAGTCCCTCCTTCTGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTGGAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTCTCCACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCTATACCAATATGCCACTATGACGATACCGAATCAGCCAAAGCATCAAGACAACAACTTAAAGAAGCAATCTATGTTGTCTTGTTTGACATGAATGTTCCTGCTGTATGTGCTCTCAATCAGGGTACTTTAGCTCTGTATGCTGCAAATCAAACATCTGGGATAGCTGTTAATATAGGCTTTCAAGTCACATCTATAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACTGGATTTCTTAGAGAACAAATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTCAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCATCGCTCTTTGTGTGGATCATTGCTATTCTGCAGAATTGGCAGGCAACAACGATTGGTATAAGACTGTTGTCTTATCAGGGGGAACTGCGTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAACTCCATTCATTACTTCCTCCTTATATGTCCAATGGAATTAGAGTCATACCTCCTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGTTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA 1410 0.4766 MATLLRKLCESATMKRSGSHSHPHPLPSSEQARPSSPLGAFDPLPADILMQIVRLLGPKHAARLCLVSKSWRSLVSDNALWAHFLQTHHPHSPLFAETALSSGYPLPTLPAQNSPRVSFQHAYALRERVPPSVVIDGGSGYCKFGWSKGASPSGRFATFLEFGNVETPMYTRLRHFFSTIYNRMQVKPSSQPVVVSIPICHYDDTESAKASRQQLKEAIYVVLFDMNVPAVCALNQGTLALYAANQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLYTVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAIALCVDHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSLLPPYMSNGIRVIPPPFGVDTAWFGGKIISSLSTFPGPWCTTKKQFRQKSKLNRIW* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0798 469 Gene3D Actin; Chain A, domain 4 280 362 - -
Gso16g0798 469 Gene3D - 29 128 - -
Gso16g0798 469 SUPERFAMILY F-box domain 31 107 IPR036047 GO:0005515
Gso16g0798 469 SUPERFAMILY Actin-like ATPase domain 131 252 IPR043129 -
Gso16g0798 469 PANTHER ACTIN 91 465 IPR004000 -
Gso16g0798 469 CDD NBD_sugar-kinase_HSP70_actin 133 277 - -
Gso16g0798 469 ProSiteProfiles F-box domain profile. 38 84 IPR001810 GO:0005515
Gso16g0798 469 Gene3D - 133 461 - -
Gso16g0798 469 MobiDBLite consensus disorder prediction 14 35 - -
Gso16g0798 469 SMART fbox_2 44 84 IPR001810 GO:0005515
Gso16g0798 469 PANTHER ACTIN-RELATED PROTEIN 8 91 465 - -
Gso16g0798 469 Pfam Actin 179 455 IPR004000 -
Gso16g0798 469 Pfam F-box-like 44 84 IPR001810 GO:0005515
Gso16g0798 469 SMART actin_3 130 459 IPR004000 -
Gso16g0798 469 MobiDBLite consensus disorder prediction 12 37 - -
Gso16g0798 469 Gene3D - 237 434 - -
Gso16g0798 469 SUPERFAMILY Actin-like ATPase domain 247 456 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0798 Gso-Chr16 18570989 18584415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0798 179 452 Cytoskeleton Gene Families AT3G12110 33.451 4.65e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0798 K16616 - gmx:100804254 931.013