Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0774 ATGGAAGGAGGTCGTCGGAGGATAACGCTTTACGATCAAATGACAGCTGGTAACAGTTGCAGCAGCGGCAGCCGAGACTCACTAGCCAGCCTCATGATGGACGACGTAGTTTTCAAGAAGATGGAAACCGAAGCGAGCGGCGAGCTGAGCCGAAGCCGAACTCTCCAAGACATCATTCGCGAAGAGAAACCTAACAACAGCAGCAACGCGACGGATCGCAATTCTTGGAAAGCCTTCAAGGAGAAGCTTTGGCTCAAGCGCGCCATCGGCTCGGCTTGGTCCTCCGCCACCACTATCACTAATCACAGCAATGATGATAGAAATTTACCAAATTTACCTGAAACTCGCCATGACTCGGACGAGTTGACTCAGCAGAACGACGTCGTTGCGGGAGAGGCCAACGATTCGGAACCGATCGCGCGGTTCGGGTCACCGGTGGAACAGGTGGCAGCCGGCGGAGACTCCTCCGACGGCGAGAACAACCACGAGGCGGTGGTTGGCGTGTCGCTGATGGACTTGCTGGAGGAAGCAGAGCAGGAAATGGATTTGTATAGAGTGAGCGATGATGATGACGTGGCAGAATATGAGAAGCGAGAAGGAGAAGGCGAAGAAGAAAAAGGGGGTGTGGTGGAGTATAACTGCTGCGTGTGCATGGTGCGGCATAAAGGCGCGGCGTTTATCCCGTGCGGGCACACGTTTTGCAGAATGTGTTCGAGGGAGATTTGGGTGAGCAGAGGGAACTGCCCTCTCTGCAACAATTTAATTTTGGAAATTCTTGATATTTTCTGA 789 0.5311 MEGGRRRITLYDQMTAGNSCSSGSRDSLASLMMDDVVFKKMETEASGELSRSRTLQDIIREEKPNNSSNATDRNSWKAFKEKLWLKRAIGSAWSSATTITNHSNDDRNLPNLPETRHDSDELTQQNDVVAGEANDSEPIARFGSPVEQVAAGGDSSDGENNHEAVVGVSLMDLLEEAEQEMDLYRVSDDDDVAEYEKREGEGEEEKGGVVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0774 262 SMART ring_2 214 251 IPR001841 -
Gso16g0774 262 CDD RING-HC 214 251 - -
Gso16g0774 262 PANTHER OS01G0917900 PROTEIN 108 262 - -
Gso16g0774 262 PANTHER OS01G0917900 PROTEIN 15 104 - -
Gso16g0774 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 262 IPR013083 -
Gso16g0774 262 ProSiteProfiles Zinc finger RING-type profile. 214 252 IPR001841 -
Gso16g0774 262 MobiDBLite consensus disorder prediction 98 121 - -
Gso16g0774 262 MobiDBLite consensus disorder prediction 48 73 - -
Gso16g0774 262 PANTHER OS01G0917900 PROTEIN 108 262 - -
Gso16g0774 262 PANTHER OS01G0917900 PROTEIN 15 104 - -
Gso16g0774 262 SUPERFAMILY RING/U-box 213 258 - -
Gso16g0774 262 Pfam Zinc finger, C3HC4 type (RING finger) 212 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0774 Gso-Chr16 16443732 16445168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0774 1 262 C3H Transcription Factor Family AT3G25030 38.519 7.23e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0774 - - gmx:100819018 514.612