LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0748	ATGGACTTCAGGGATGCATGGGCTGGCTTCTTTCTGTTTTGCAGCTTCTGGCTTGTCACTTTCTGTGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATACATCTAATATTTCATGGGTACCAGACACCTCCTACATAACCACAGGCAAGACTACCACCATCACTTACAGTGATGACTCCTCCGCATTGAACATCTCAGCTCGCTTCTTCCTGAATTCCAGAAGGCGAAAATGCTACAGAATACCAGTAAACAATTCAACAACTTTGGTTCTGGTTAGAGCAACATTTTTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTCTGCTTCTATTGGGACAGCTATTGCTGCAACCATAAATCTTGCTGAATCTGATCCATGGAGTGAAGAGTTTCTATGGACTGTCAACAAGGATACACTGTCATTCTGCTTAAATGCAATTCCAAAAGGTGGTTCACCTGTTATTTCTTCCCTTGAAATCAGACCACTTCCTCAAGGAGCCTACACAAATGGCATGGCAGATTTTCCTAATAAGTTGCTTAGGAAGAGTTATAGAATTGATTGTGGACACTCCAATGGTTCTATAAGGTATCCCTTGGATCCATTTGATAGGATATGGGATGCTGATAGAAGTTTCACACCATTTCATGTTGCAACTGGGTTTAAGATTCAACTTAGCTTCAAACAGTCTAGTCTTGAGGAAAAACCACCACCAGCTATTCTTCAAACTGGGAGAGTTTTGGCTCGAAGAAATACGCTGACATACAGCCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCTGGAATTCTTCCTGTCTTTCCCTCATTTGATGTCCTTATAAATGGAGAACTGGTAAAATCAAACTACACAATAAATAGCTCAGAAACCAGTGCTTTATACCTAACACAAAAGGGAATTGGCAGCTTGAATATAACATTAAAGAGTATCAGCTTTTGCCCTCAGATCAATGCATTTGAGGTTTATAAGATGGTTGATGTTCCATCTGATGCCTCCTCAACCACAGCATTGCAGGTTATTCAGCAATCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGCCTTCCTTCCCCATGGGAGAAAATTGAATGTGAAGGAAGCCTTATTACATCATTGGATCTTTCAGACATAAATTTGAGATCGATTAGTCCTACATTCGGTGACTTGTTAGACCTTAAAACATTGGATTTGCACAACACATTGCTTACTGGTGAAATTCAGAATTTGGATGGCTTGCAACATCTTGAGAAACTGAACCTGAGTTTCAATCAACTAACATCCATTGGTGCAGATCTACAGAACTTGATTAACCTTCAAATACTAGACTTGCAGAACAATAATCTAATGGGAGTAGTGCCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCACTACCACAGTCTTTGAACAAAGAAACGCTAGAGATCAGGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGCATCATTCAGTCCTCCAATTGAGGCACCACAAGTCACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACCATCTAGCAATCATATTAGGCATAGTTGGAGGAGCCACACTGGCCTTTATCTTGATGTGTATTTCGGTATTGATATACAAGACTAAACAGCAATATGAAGCCTCCCACACATCAAGGGCAGAAATGCATATGAGGAACTGGGGTGCTGCAAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAAGAAGTCATAGGAAGGGGCAGTTTTGGATCTGTTTATCTTGGAAAACTTCCAGATGGAAAATTGGTGGCTGTCAAAGTTCGGTTTGACAAATCTCAATTGGGTGCTGATTCTTTCATCAATGAGGTTAATCTTTTGTCAAAAATCCGGCATCAAAATCTTGTATCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTACGAGTACTTGCCAGGTGGATCCCTGGCTGATCACCTCTATGGTACAAACAATCAAAAAACTTCCTTAAGCTGGGTTCGAAGGTTGAAAATTGCCGTTGATGCAGCAAAAGGATTGGACTATTTGCACAATGGAAGTGAACCACGAATCATACACCGTGATGTCAAGTGCAGTAACATCCTCTTGGATATGGATATGAATGCCAAGGTCTGTGACTTAGGTCTCTCTAAGCAAGTAACTCAGGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTACCTCGATCCAGAGTATTATTCCACTCAACAATTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAACTCCTGATTCTTTCAATTTGGTGTTATGGGCCAAGCCATACTTGCAGGCTGGTGCATTTGAGATTGTGGATGAGGACATAAGAGGAAGCTTTGATCCCTTGAGTATGAGGAAGGCAGCTTTCATTGCTATAAAGTCAGTCGAGAGAGATGCATCACAGAGGCCATCTATTGCAGAGGTACTAGCAGAGCTAAAGGAAACCTACAATATTCAGCTCAGATTCCTTGAATCTTGTCAAAATGAGAACTGA	2709	0.4116	MDFRDAWAGFFLFCSFWLVTFCEQDGFLSLSCGGRTSFRDTSNISWVPDTSYITTGKTTTITYSDDSSALNISARFFLNSRRRKCYRIPVNNSTTLVLVRATFLYKNYDGLGKPPKFSASIGTAIAATINLAESDPWSEEFLWTVNKDTLSFCLNAIPKGGSPVISSLEIRPLPQGAYTNGMADFPNKLLRKSYRIDCGHSNGSIRYPLDPFDRIWDADRSFTPFHVATGFKIQLSFKQSSLEEKPPPAILQTGRVLARRNTLTYSLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYTINSSETSALYLTQKGIGSLNITLKSISFCPQINAFEVYKMVDVPSDASSTTALQVIQQSTGLDLGWQDDPCLPSPWEKIECEGSLITSLDLSDINLRSISPTFGDLLDLKTLDLHNTLLTGEIQNLDGLQHLEKLNLSFNQLTSIGADLQNLINLQILDLQNNNLMGVVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCDDASFSPPIEAPQVTVVPQKKHNVHNHLAIILGIVGGATLAFILMCISVLIYKTKQQYEASHTSRAEMHMRNWGAAKVFSYKEIKVATRNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGTNNQKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDMNAKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGTPDSFNLVLWAKPYLQAGAFEIVDEDIRGSFDPLSMRKAAFIAIKSVERDASQRPSIAEVLAELKETYNIQLRFLESCQNEN*	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g0748	902	ProSiteProfiles	Leucine-rich repeat profile.	436	458	IPR001611	GO:0005515
	Gso16g0748	902	Pfam	Malectin-like domain	30	345	IPR024788	-
	Gso16g0748	902	Pfam	Protein kinase domain	615	882	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso16g0748	902	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	10	897	-	-
	Gso16g0748	902	Gene3D	Phosphorylase Kinase; domain 1	584	688	-	-
	Gso16g0748	902	SUPERFAMILY	L domain-like	361	504	-	-
	Gso16g0748	902	SMART	serkin_6	613	885	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso16g0748	902	ProSitePatterns	Protein kinases ATP-binding region signature.	619	641	IPR017441	GO:0005524
	Gso16g0748	902	PANTHER	OS07G0107800 PROTEIN-RELATED	10	897	-	-
	Gso16g0748	902	SUPERFAMILY	Protein kinase-like (PK-like)	592	884	IPR011009	-
	Gso16g0748	902	Gene3D	Transferase(Phosphotransferase) domain 1	689	898	-	-
	Gso16g0748	902	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	735	747	IPR008271	GO:0004672\|GO:0006468
	Gso16g0748	902	CDD	STKc_IRAK	619	886	-	-
	Gso16g0748	902	ProSiteProfiles	Protein kinase domain profile.	613	895	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso16g0748	902	Pfam	Leucine rich repeat	436	494	IPR001611	GO:0005515
	Gso16g0748	902	Gene3D	-	192	346	-	-
	Gso16g0748	902	SMART	LRR_typ_2	457	480	IPR003591	-
	Gso16g0748	902	SMART	LRR_typ_2	434	456	IPR003591	-
	Gso16g0748	902	Gene3D	Ribonuclease Inhibitor	354	526	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0748	Gso-Chr16	14579688	14587497	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g0748	10	897	Receptor kinase-like Gene Family	AT5G48740	62.472	0.0	1100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Gso16g0748		Malectin_like	7.5e-53	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0748	-		-	gmx:100812804	1746.48