Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0745 ATGTGCACACCTAGACCTTTCCAACCTCTCCTGACATCGTGCACCTGTTGTTTTTTTTTTTTTTTCCTTAGAAATTTGTTGTGCCTTTGTATAATGGGTAGGCCACCTTGCTGTAACGAGAGTGGTGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGGGGAACGTGGAGAACCCTTCCAAAGCATGCAGGTCTAAATAGGTGCGGGAAAAGCTGCAGGTTAAGGTGGGAAAACTATCTAAGACCAGATATTAAGAGAGGGAAATTCACTGAAGAAGAGGAGCAATTGATCATCAACCTTCATTCAGTTATTGGAAACAAGTGGGCAAAGATTGCTACCCATCTTCCAGGGAGAACCGATAATGAGATCAAGAATTATTGGAACACCAACTTAAGAAAAAAGCTTCTCCAGATGGGTATTGACCCAGAAACTCACAAGCCTAGAACTGACTTCAATCACCTCTTGAATCTTTCCCAGTTGCTTGGCTTGTCAAATTTGGGCACATCAACGAGTCCCTGGACAAATCCTCTGGGTTTACAAGCAGATGTCACTCAAATAGCCAAACTACAACTGCTACAAAACATGTTACAACTATTTAACGGCACTTCATTGGTTAACATAGGTAACCCTTACCTCTTAGGAAATCAAATTCTCAACCCACTTGATACATTTCTCAATGGGACAAACATCCTACCAGACAAAGATTCAATTTTGAGAGGTCTAGAATATGCAAACCCTGTAGGTAACAATTCTGGCCTGTTTCTGTCTCAAACATACAGTGACTCCAGTGTCTTCAAATCACGGACTGAAAAAGAAAATGAAACTAATCAAGAATTTCTTGGTTATAACCAAAGCATCAGCACTTTTCCAGAAAATCAAGCAGAAAACTTACTTCCTGCATTAGTTGCATCCGGTCCAAGGTCAAGCACCTTCAACCAAATGGATTTCAACTACAACGCAGCACGAATGTCCACCCAGTCACCTTCCACAACCTTTGAGGCTTGGGAGAAGTTCCTTATTGATGACGATGAATCAAGCGGTTCTTACTGGAAAGAGATTCTAGACTTGACATATCCACTTTCCTGGTAG 1125 0.4133 MCTPRPFQPLLTSCTCCFFFFFLRNLLCLCIMGRPPCCNESGVKKGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYLRPDIKRGKFTEEEEQLIINLHSVIGNKWAKIATHLPGRTDNEIKNYWNTNLRKKLLQMGIDPETHKPRTDFNHLLNLSQLLGLSNLGTSTSPWTNPLGLQADVTQIAKLQLLQNMLQLFNGTSLVNIGNPYLLGNQILNPLDTFLNGTNILPDKDSILRGLEYANPVGNNSGLFLSQTYSDSSVFKSRTEKENETNQEFLGYNQSISTFPENQAENLLPALVASGPRSSTFNQMDFNYNAARMSTQSPSTTFEAWEKFLIDDDESSGSYWKEILDLTYPLSW* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0745 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Gso16g0745 374 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Gso16g0745 374 PANTHER MYB TRANSCRIPTION FACTOR 32 369 - -
Gso16g0745 374 CDD SANT 47 92 IPR001005 -
Gso16g0745 374 CDD SANT 100 143 IPR001005 -
Gso16g0745 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 32 369 - -
Gso16g0745 374 Gene3D - 99 165 - -
Gso16g0745 374 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Gso16g0745 374 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Gso16g0745 374 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Gso16g0745 374 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Gso16g0745 374 Gene3D - 44 97 - -
Gso16g0745 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Gso16g0745 374 SMART sant 44 94 IPR001005 -
Gso16g0745 374 SMART sant 97 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0745 Gso-Chr16 14472798 14475517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0745 32 374 MYB Transcription Factor Family AT3G02940 45.869 2.61e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0745 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0745 K09422 - gmx:100803906 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0145 1 1634109 1636689 Gso16g0745 16 14472798 14475517 PCT
Gso9g1701 9 41417542 41420025 Gso16g0745 16 14472798 14475517 PCT
Gso16g0745 16 14472798 14475517 Gso1g0145 1 1634109 1636689 PCT
Gso16g0745 16 14472798 14475517 Gso9g1701 9 41417542 41420025 PCT