Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0744 ATGAGCTTTCAGGACATCGAGGCCGGGCGCCCCTTCGGTTCGAGGCGCGGGTTGATGAATGGGAAGCAAGACCCCACGCAAGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATCTTCAAAGATCTTGCTGTACTTGTCCATGAGCAAGGAGCCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTCAAAAGCTTCAAAAACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4647 MSFQDIEAGRPFGSRRGLMNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTLDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKSPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLSKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0744 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso16g0744 273 SMART tSNARE_6 175 242 IPR000727 -
Gso16g0744 273 CDD SNARE_Qa 200 241 - -
Gso16g0744 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Gso16g0744 273 CDD SynN 19 148 IPR006011 GO:0016020
Gso16g0744 273 Gene3D - 174 273 - -
Gso16g0744 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Gso16g0744 273 SUPERFAMILY t-snare proteins 19 235 IPR010989 GO:0016020|GO:0016192
Gso16g0744 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Gso16g0744 273 Gene3D - 20 133 - -
Gso16g0744 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Gso16g0744 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Gso16g0744 273 Pfam SNARE domain 217 268 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0744 Gso-Chr16 14348329 14352380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0744 1 261 SNARE and Associated Proteins AT5G46860 78.161 5.68e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0744 - K08488 gsj:114390582 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0139 1 1563274 1568390 Gso16g0744 16 14348329 14352380 PCT
Gso9g1707 9 41490289 41495527 Gso16g0744 16 14348329 14352380 PCT
Gso16g0744 16 14348329 14352380 Gso1g0139 1 1563274 1568390 PCT
Gso16g0744 16 14348329 14352380 Gso9g1707 9 41490289 41495527 PCT