Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0734 ATGAGTAGTGTGTGGTGTGGTCCAAAAATGTACGAAGAAAGTAGTTGCTATGATCCCGATGCAATGATGGCAGAGGGAGCAGAAGACTGCTTCCCCCAAATGGTTTCAGAATCAGAGGCAGTTATGTCTGCTACACCCACACAGACCCACACCCACAACACCTTTGCCTACTCCTATTCCTGCGGAGAAGATGCTGCAAATGCAAATGGCCCAATAGCGATGGAACACCCCCAACAAAATCCATACAATTATAGCAACACCCAATTTGTGGAAGAGCTTTATTCGAATCAGCAATTTACTTATCACACACCAACACCAGATCTCCTTGACCTTCTCCACTTGCCAAACCCTATTCCAGGAGATAATAGGACAAACGTCTCCTCTGTGTCCTATGACCCTTACTTGCATCTCAACCTGCAACAACAACAACAACCTACCCTCCGAGAGTTGCTTCCTCACATGCCGGCTCTCAGAAATGATTTCCCCTTCGGCGGTGCCGCTGGAGGGGACGACATACAAGACTTCGGAAATGGATTGGTGGACTTCACTCAACAAGAAGTTGGGAAAAGGAGAGGTGGAAAGAGGACGAAGCAGTTCACCAGCACCACCACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCTGTGGTGGGAGATGCAATTAACTACATCAGAGAGCTTAAGAGGACAGTGGAAGAACTCAAATTACTGGTGGAGAAGAAGAGGCTCGAGAAACAAAGGGTGATGATGAGGCACAAGGTTGAAACTGAAGGTGAATCCTCCAACCTGGACCCTGCAGAGTACAGTGAAAGCTTAAGAAGTTCTTGGATACAGAGAAAAACCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTCACAATTAAGCTTGTTCAGAGGAAGAAGATCGATTGCTTGGTGCATGTGTCTCACCTTCTCGATCAACTTAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTCTTCAATACCAAGATATGTGAAGGTTCCTCAATTTATGCGAGTGCCATAGCCAACAAGCTCATTCAGGTCATGGACACAAGTTTGGCGGCAGCGTCACTCGCTTAA 1170 0.4667 MSSVWCGPKMYEESSCYDPDAMMAEGAEDCFPQMVSESEAVMSATPTQTHTHNTFAYSYSCGEDAANANGPIAMEHPQQNPYNYSNTQFVEELYSNQQFTYHTPTPDLLDLLHLPNPIPGDNRTNVSSVSYDPYLHLNLQQQQQPTLRELLPHMPALRNDFPFGGAAGGDDIQDFGNGLVDFTQQEVGKRRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVEELKLLVEKKRLEKQRVMMRHKVETEGESSNLDPAEYSESLRSSWIQRKTKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSHLLDQLNLDLQHVAGGHIGDFCSYLFNTKICEGSSIYASAIANKLIQVMDTSLAAASLA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0734 389 Coils Coil 242 262 - -
Gso16g0734 389 SMART finulus 202 251 IPR011598 GO:0046983
Gso16g0734 389 PANTHER TRANSCRIPTION FACTOR BHLH91 13 386 IPR045895 GO:0006355|GO:0048658
Gso16g0734 389 Gene3D - 193 275 IPR036638 GO:0046983
Gso16g0734 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Gso16g0734 389 CDD bHLH_AtMYC1_like 203 260 IPR045896 -
Gso16g0734 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 269 IPR036638 GO:0046983
Gso16g0734 389 MobiDBLite consensus disorder prediction 187 206 - -
Gso16g0734 389 Pfam Helix-loop-helix DNA-binding domain 204 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0734 Gso-Chr16 13564589 13566388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0734 10 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.876 9.93e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g0734 HLH 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0734 - - gmx:100795938 734.947