Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0696 ATGTCTTCTTCATCATACTTCTCAGATTCCAATCCCCAATGGATATATGACGTGTTCATCAATTTTAGGGGAGAAGACACTCGTAGGAATTTCGTTTCTCATCTCTATTCTGCCCTCTCAAATGCTGGAGTCAATACTTTCCTTGACGAAATGAATTATCCAAAGGGAGAGGAACTAAACGAAGGATTATTACGAACGATAGAAGGATGTCGGATATGTGTAGTTGTTTTCTCCACAAACTACCCTGCGTCTTCTTGGTGTCTTAAAGAGTTGGAAAAAATCATTGAATGCCACAAAACTTATGGCCACATAGTTTTGCCCATATTTTACGATGTTGATCCCTCCGATATACGTCATCAGCAGGGTGCTTTTGGGAAAAATTTGAAAGCATTTCAAGGATTGTGGGGAGAATCTGTGTTGTCGAGGTGGAGCACGGTACTCACCCAAGCTGCAAACTTCTCGGGTTGGGATGTGAGCAATAACAGGAACGAGGCTCAATTTGTGAAGGAAATTGTTGAAGATGTTCTCACAAAACTAGACAACACATTCATGCCTATCACTGAATTTCCTGTTGGATTAGAATCCCATGTGCAAGAAGTGATTGGATATATTGAAAATCAGTCAACCAAAGTTTGTATCGTAGGGATATGGGGGATGGGTGGATTGGGTAAAACTACCACAGCCAAAGCCATCTACAATCGAATTCATCGTAGATTCACGGGTAGATGTTTCATTGAAGATATTCGAGAAGTTTGTGAAACAGATCGAAGAGGGCATGTTCATTTGCAAGAACAACTTCTTTCAGATGTCCTTAAAACAAAGGTGAACATAAAAAGCGTTGGGATAGGAAGAGCTATGATGGAGAGCAAACTTTCTGGAACAAAGGCACTCATTGTACTTGATGATGTTAATGAGTTTGGTCAGTTAAAAGTCCTATGCGGAAATCGTAAATGGTTTGGTCAAGGAAGTATAGTAATCATTACAACTAGAGATGTACGCCTACTTCACAAACTTAAAGTTGATTTTGTTTATAAAATGGAGGAAATGGACGAAAATAAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTGGAGAAGCAAAACCAATAGAAGAGTTCGATGAACTTGCAAGAAATGTAGTTGCTTATTGTGGAGGACTACCACTAGCTCTTGAAGTCATTGGTTCTTATTTAAGTGAGAGGACGAAGAAAGAGTGGGAAAGTGTATTGTCAAAACTAAAAATAATTCCCAATGATCAAGTTCAAGAGAAATTAAGGATAAGCTATAATGGCTTATGCGATCACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTACATGCTGATATAGGAATAACAGTTCTCATGGAGCGTAGCCTCGTAAAAGTTGCAAAGAACAACAAACTTGGAATGCATCCATTACTACGAGACATGGGAAGAGAGATAATTCGTGAAAGTTCAACAAAGAAACCTGGGAAGCGCAGTCGATTGTGGTTTCATGAGGATTCACTTAATGTATTGACAAAGAATACTGGGACAAAAGCTATTGAGGGATTGGCTCTGAAATTGCATTCAAGCAGCAGAGATTGCTTCAAAGCTTATGCTTTTAAGACAATGAAGCAATTGAGACTATTGCAACTTGAGCATGTACAACTCACTGGAGATTATGGGTATCTTCCTAAGCATCTGAGATGGATCTATTGGAAAGGATTTCCTTTAAAATACATGCCTAAAAACTTTTATCTGGGAGGCGTAATTGCGATTGATTTAAAAGACAGCAATCTTAGACTAGTCTGGAAAGACCCCCAGGTTTTGCCGTGGCTGAAAATCCTCAATCTTAGTCATTCTAAGTACTTGACAGAAACCCCTGACTTTTCAAAACTACCAAGTCTTGAAAAGCTTATTCTCAAAGATTGTCCGAGTTTGTGCAAGGTACACCAGTCCATTGGAGATCTCCAAAATCTTCTCTGGATAAATTTGAAGGACTGTACAAGCCTAAGCAATCTCCCAAGAGAGATATATAAGTTGAAATCTTTGAAAACTCTCATCATATCCGGTTCGAGGATTGACAAATTGGAAGAAGATATAGTGCAGATGGAATCCTTGACTACTCTAATTGCTAAAGATACAGCTGTGAAACAAGTGCCCTTTTCAATTGTAAGATTAAAAAGCATTGGATATATCTCCCTATGTGGATATGAAGGATTATCACGTAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAATGAATCCCCTATCTCGTATTCGTTCATTTAGTGGCACTTCATCATCTTTAATTTCCATGGATATGCATAATAATAATTTGGGTGATCTAGCACCAATTCTTAGCAGCCTTTCAAATCTTCGAAGTGTTTCAGTGCAATGTCACAGGGGGTTTCAACTATCTGAAGAATTAAGAACAATTCAGGATGAGGAATATGGAAGTTACCGAGAATTGGAAATAGCATCATATGTATCACAAATTCCAAAGCATTACTTGAGGTCTTATTTGATTGGAATTGGAAGTTATCAAGAATTCTTCAATACCCTAAGCAAAAGCATATCTGAGGGATTGGCAACCAGTGAGGTTAGTGATGTTTTTCTCCCTAGTGATAATTATCCTTATTGGTTGGCCCATATGGGGGATGGACATTCAGTGTATTTCACTGTGCCCGAGGATTTTCACATGAAGGGAATGACTTTGTGTGTTGTTTATTTATCAACCCCTGAAAACACTGCAATTGAATGTCTTATTAGTGTATCAATGGTTAATTACACAAAGGGCACCATCCAGATATTCAAGCGAGACACAGTAATTTCCTTTAACGATGAAGACTGGCAGGGCATAATATCACATTTGGGACCTGGAGACAAGGTGGAAATTTGTGTGACTTTTGGGCATGCATTGCTGGTTAAGAAGACAGCTGTCTATCTAATAATGTGCAATGAATCGATTGACAAGGAAACCATCCCTTCTCCTGATCCAAAAGAAAAGCCAAAGAAAAATGTAATCGTAGGATTCATAAAAGAAATTTGTAATGTGTAA 3111 0.3825 MSSSSYFSDSNPQWIYDVFINFRGEDTRRNFVSHLYSALSNAGVNTFLDEMNYPKGEELNEGLLRTIEGCRICVVVFSTNYPASSWCLKELEKIIECHKTYGHIVLPIFYDVDPSDIRHQQGAFGKNLKAFQGLWGESVLSRWSTVLTQAANFSGWDVSNNRNEAQFVKEIVEDVLTKLDNTFMPITEFPVGLESHVQEVIGYIENQSTKVCIVGIWGMGGLGKTTTAKAIYNRIHRRFTGRCFIEDIREVCETDRRGHVHLQEQLLSDVLKTKVNIKSVGIGRAMMESKLSGTKALIVLDDVNEFGQLKVLCGNRKWFGQGSIVIITTRDVRLLHKLKVDFVYKMEEMDENKSLELFSWHAFGEAKPIEEFDELARNVVAYCGGLPLALEVIGSYLSERTKKEWESVLSKLKIIPNDQVQEKLRISYNGLCDHMEKDIFLDVCCFFIGKDRAYVTEILNGCGLHADIGITVLMERSLVKVAKNNKLGMHPLLRDMGREIIRESSTKKPGKRSRLWFHEDSLNVLTKNTGTKAIEGLALKLHSSSRDCFKAYAFKTMKQLRLLQLEHVQLTGDYGYLPKHLRWIYWKGFPLKYMPKNFYLGGVIAIDLKDSNLRLVWKDPQVLPWLKILNLSHSKYLTETPDFSKLPSLEKLILKDCPSLCKVHQSIGDLQNLLWINLKDCTSLSNLPREIYKLKSLKTLIISGSRIDKLEEDIVQMESLTTLIAKDTAVKQVPFSIVRLKSIGYISLCGYEGLSRNVFPSIIWSWMSPTMNPLSRIRSFSGTSSSLISMDMHNNNLGDLAPILSSLSNLRSVSVQCHRGFQLSEELRTIQDEEYGSYRELEIASYVSQIPKHYLRSYLIGIGSYQEFFNTLSKSISEGLATSEVSDVFLPSDNYPYWLAHMGDGHSVYFTVPEDFHMKGMTLCVVYLSTPENTAIECLISVSMVNYTKGTIQIFKRDTVISFNDEDWQGIISHLGPGDKVEICVTFGHALLVKKTAVYLIMCNESIDKETIPSPDPKEKPKKNVIVGFIKEICNV* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0696 1036 Gene3D - 348 432 IPR042197 -
Gso16g0696 1036 Gene3D - 182 343 IPR027417 -
Gso16g0696 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Gso16g0696 1036 SMART till_3 15 153 IPR000157 GO:0007165
Gso16g0696 1036 Pfam NB-ARC domain 194 418 IPR002182 GO:0043531
Gso16g0696 1036 Pfam TIR domain 16 183 IPR000157 GO:0007165
Gso16g0696 1036 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Gso16g0696 1036 Gene3D - 10 181 IPR035897 -
Gso16g0696 1036 PRINTS Disease resistance protein signature 213 228 - -
Gso16g0696 1036 PRINTS Disease resistance protein signature 290 304 - -
Gso16g0696 1036 PRINTS Disease resistance protein signature 383 397 - -
Gso16g0696 1036 PRINTS Disease resistance protein signature 644 660 - -
Gso16g0696 1036 SUPERFAMILY L domain-like 489 815 - -
Gso16g0696 1036 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1001 - -
Gso16g0696 1036 Gene3D Ribonuclease Inhibitor 531 845 IPR032675 -
Gso16g0696 1036 ProSiteProfiles TIR domain profile. 14 179 IPR000157 GO:0007165
Gso16g0696 1036 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1001 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0696 Gso-Chr16 10494917 10499740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0696 16 760 WRKY Transcription Factor Family AT4G12020 28.971 1.55e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0696 - - gmx:100813173 2080.06