Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0690 ATGTTCTCTATCTATACCAAAGGGGTTTATTTTAATGGATTTATTATAAATTTTTTCTTTGGTTCTTATGGAGAAAAAACACACACCGTGTCTTGTCTTCTAAGTAGAGCATCGTCTAGAATTCATTTCTTGCACTCAATGGCGTCTTCATCTTCCAACAGCTACTCCAAGGTCAACGACGTGTTCTTGAACTTCAGAGGAGAAGACACGCGCAAGACTTTCGTGTCTCATCTGTATGCTGCCCTCTCTAATGCAGGAATCAACACTTTCATCGATCACAAGCTTCGCAAGGGAACGGAGTTGGGAGAGGAACTGTTAGCAGTCATAAAAGGGTCTCGGATATCCATCGTCGTTTTCTCGGCTAACTATGCTTCATCAACTTGGTGTCTTCATGAGCTGGTCGAAATAATTTACCACCGTAGAGCTTATGGCCAGGTGGTTGTGCCTGTATTTTACGATGTTGATCCATCTGATGTACGTCATCAAACGGGTGCTTTTGGACAACGCTTGAAAGCACTTATGCAAAAAAGTAAGCCCATCGACTTTATGTTTACGAGTTGGAAGAGTGCACTCAAGGAGGCTTCAGATTTGGTCGGTTGGGATGCCAGAAATTGGAGGAGTGAAGGTGACCTAGTGAAGCAAATTGTTGAGGACATTTCTAGAAAACTAGACACCCGGCTGTTGTCTATTCCCGAATTCCCAGTTGGATTAGAATCCCGAGTGCAAGAAGTAATTGAGTTTATTAATGCTCAATCAGACACAGGTTGTGTTGTAGGGATTTGGGGAATGGGTGGCTTGGGTAAAACAACCATGGCCAAAGTTATCTACAATAAGATTCACCGGAGATTCAGGCATAGCAGTTTCATTGAAAATATTAGAGAAGTTTGTGAAAATGATAGTAGAGGGTGTTTTTTTTTGCAACAACAACTTGTTTCTGATATCCTAAATATTAGAGTCGGGATGGGGATAATTGGGATCGAGAAAAAACTTTTTGGAAGAAGGCCCCTTATTGTACTTGATGATGTGACTGATGTTAAGCAATTGAAAGCCCTATCTTTAAATCGTGAATGGACTGGTACAGGATGTGTGTTCATCATTACAACCAGAGATGTACGCCTACTTAATGTACTTAAACCTTATCACAGAGTCCATGTTTGTAGAATAAAGGAAATGGACGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAAGCACATCCAAGAGAAGACTTGATTAAACTCTCAATGGACATAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATGTGAGAGGACAAAAGAAGAATGGGAAAGTGTGTTGGCAAAACTAAGGAAAATTCCCAATGACCAAGTACAAGAGAAACTTAGAATAAGCTATGATGATTTAGATTGTGAGGAAAAGAATATATTCCTTGACATATGTTTTTTCTTTATTGGCAAGGATAGAGTCAATGTTACAGAGATATTAAAAGGTTGTGATCTGCATGCTGAAATTGGAATAACAATCCTGGTTGAAAGGAGCCTCATAAAGCTTGAAAAGAATAACAAGATCAAAATGCACAATTTGCTACGTGACATGGGAAGAGAAATTGTTCGTCAAAGTTCTCTAGAGGAACCTGAGAAGCGTAGTCGATTGTGGGTTCACCAAGAAGTGCTTGATTTGTTGTTAGAACATACTGGAACAAAAGCAATTGAGGGCTTGGCTTTGAAGTTACAAAGAACTAGTGGACTTCACTTCAATACTAAAGCATTTGAGAAAATGAAGAAATTGAGACTTTTGCAACTTGATCATGTACAACTTGTTGGAGATTATGAGTATCTTAACAAAAACCTAAGATGGCTTTGTTTGCAAGGATTTCCTCTACAACACATACCAGAAAACTTGTACCAGGAAAATCTAATTTCTATTGAATTAAAATATAGTAATATTAGACTAGTATGGAAGGAGCCACAGTTGCTGCAGAGGCTAAAGATCCTCAATCTTAGCCATTCAAGGAACTTGATGCACACCCCTGATTTTTCAAAACTACCAAATCTTGCAAAACTCAATCTCAAAGATTGTCCAAGATTGTCTGAGGTGCACCAATCCATTGGAGACCTAAATAATCTTCTTGTGATAAATTTGATGGACTGTACAAGTCTAAGCAATCTTCCGAGGAGGATCTATCAGTTGAAATCTTTGCAAACTCTCATCTTTTCTGGTTGTTCAAAGATTGACATGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACTACACTGATTGCAAAAGATACAGCCGTAAAAGAAATGCCTCAATCAATTGTAAGGTTAAAAAACATTGTTTATATATCCCTCTGTGGACTTGAAGGATTAGCACGTGATGTTTTTCCTTCTCTCATATGGTCTTGGATGTCACCAACAGCAAATCTCAGATCTTGTACTCACTCATTTGGGAGCATGTCAACTTCTCTAACCTCCATGGATATTCATCATAATAATTTGGGTGACATGTTGCCAATGCTTGTTAGACTTTCAAAACTTCGAAGTATTTTAGTGCAGTGCGACTCTAAGTTTCAATTAACCCAAAAATTAAGTAAAGTTATGGATGACTTATGTCAAGTAAAATTTACAGAATTGGAAAGAACATCATATGAATCACAAATTTCAGAGAATGCCATGGAATCTTATTTGATTGGAATGGGACGCTATGACCAAGTCATCAATATGCTTAGCAAGAGCATATCAGAGGGATTGAGAACCAATGATTCAAGTGACTTTCCCCTTCCGGGTGACAATTATCCTTATTGGTTAGCTTGTATAGGTCAGGGACATTCAGTACATTTTCAATTGCCTGTGGATAGTGATTGCTGCATTAAGGGAATGACTTTGTGTGTTGTTTATTCATCAACCACTAAAAACATGGCAGAGGAATGTCTTACTGGTGTCTCCATTGTTAATTACACAAAGTGCACCATCCACATATACAAGCGAGACACAATAATTTCCTTTAATGATGAAGATTGGCAGGGCGTAATATCAAATCTAAGACCCAGTGACAATGTGGAGATTTTTGTAGTTCTTGGTCATGGATTGACGGTTGTGAAGACAGCTCTCTATCTAATATATGATGATGAGTCAATCACTGTGAAAATGGAGCCATCACCTAATGTGATAATGGAGTCATCGTCTAACATGAAAACAGATCCATCACCTAATGTTAAAATGGAGCCATTATCTAACATGAAATCAGAGCCATCCATGAAGCCAAAGAAAAATATTTTTGCTAGACTTATACAGAGAATGGGAGAATGTACATGCATGAGGTGA 3342 0.3839 MFSIYTKGVYFNGFIINFFFGSYGEKTHTVSCLLSRASSRIHFLHSMASSSSNSYSKVNDVFLNFRGEDTRKTFVSHLYAALSNAGINTFIDHKLRKGTELGEELLAVIKGSRISIVVFSANYASSTWCLHELVEIIYHRRAYGQVVVPVFYDVDPSDVRHQTGAFGQRLKALMQKSKPIDFMFTSWKSALKEASDLVGWDARNWRSEGDLVKQIVEDISRKLDTRLLSIPEFPVGLESRVQEVIEFINAQSDTGCVVGIWGMGGLGKTTMAKVIYNKIHRRFRHSSFIENIREVCENDSRGCFFLQQQLVSDILNIRVGMGIIGIEKKLFGRRPLIVLDDVTDVKQLKALSLNREWTGTGCVFIITTRDVRLLNVLKPYHRVHVCRIKEMDENESLELFSWHAFRQAHPREDLIKLSMDIVAYCGGLPLALEVLGSYLCERTKEEWESVLAKLRKIPNDQVQEKLRISYDDLDCEEKNIFLDICFFFIGKDRVNVTEILKGCDLHAEIGITILVERSLIKLEKNNKIKMHNLLRDMGREIVRQSSLEEPEKRSRLWVHQEVLDLLLEHTGTKAIEGLALKLQRTSGLHFNTKAFEKMKKLRLLQLDHVQLVGDYEYLNKNLRWLCLQGFPLQHIPENLYQENLISIELKYSNIRLVWKEPQLLQRLKILNLSHSRNLMHTPDFSKLPNLAKLNLKDCPRLSEVHQSIGDLNNLLVINLMDCTSLSNLPRRIYQLKSLQTLIFSGCSKIDMLEEDIVQMESLTTLIAKDTAVKEMPQSIVRLKNIVYISLCGLEGLARDVFPSLIWSWMSPTANLRSCTHSFGSMSTSLTSMDIHHNNLGDMLPMLVRLSKLRSILVQCDSKFQLTQKLSKVMDDLCQVKFTELERTSYESQISENAMESYLIGMGRYDQVINMLSKSISEGLRTNDSSDFPLPGDNYPYWLACIGQGHSVHFQLPVDSDCCIKGMTLCVVYSSTTKNMAEECLTGVSIVNYTKCTIHIYKRDTIISFNDEDWQGVISNLRPSDNVEIFVVLGHGLTVVKTALYLIYDDESITVKMEPSPNVIMESSSNMKTDPSPNVKMEPLSNMKSEPSMKPKKNIFARLIQRMGECTCMR* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0690 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 484 IPR027417 -
Gso16g0690 1113 MobiDBLite consensus disorder prediction 1064 1084 - -
Gso16g0690 1113 ProSiteProfiles TIR domain profile. 57 223 IPR000157 GO:0007165
Gso16g0690 1113 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 200 IPR035897 -
Gso16g0690 1113 Gene3D - 390 474 IPR042197 -
Gso16g0690 1113 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 61 1047 - -
Gso16g0690 1113 MobiDBLite consensus disorder prediction 1064 1091 - -
Gso16g0690 1113 Gene3D - 56 223 IPR035897 -
Gso16g0690 1113 SMART till_3 58 197 IPR000157 GO:0007165
Gso16g0690 1113 Pfam NB-ARC domain 238 464 IPR002182 GO:0043531
Gso16g0690 1113 PRINTS Disease resistance protein signature 257 272 - -
Gso16g0690 1113 PRINTS Disease resistance protein signature 329 343 - -
Gso16g0690 1113 PRINTS Disease resistance protein signature 425 439 - -
Gso16g0690 1113 PRINTS Disease resistance protein signature 662 678 - -
Gso16g0690 1113 Gene3D - 224 383 IPR027417 -
Gso16g0690 1113 Gene3D Ribonuclease Inhibitor 569 902 IPR032675 -
Gso16g0690 1113 SUPERFAMILY L domain-like 580 858 - -
Gso16g0690 1113 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 61 1047 IPR044974 GO:0006952
Gso16g0690 1113 Pfam TIR domain 60 226 IPR000157 GO:0007165
Gso16g0690 1113 SUPERFAMILY "Winged helix" DNA-binding domain 461 566 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0690 Gso-Chr16 10310818 10317036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0690 54 794 WRKY Transcription Factor Family AT4G12020 29.150 1.46e-72 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0690 - - gmx:100809413 2205.64