Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0685 ATGCCCTCACTATTGCGAGCCATAGAAGGGTCTAAGATACACATCATCCTTTTTTCCAATAACTATGCTTCATCTAAATGGTGTCTTGATGAGCTGGTCAAAATCATGGAATGCCATAGAACTTACGGCAAAGAGGTTTTACCCGTATTTTACAATGTTGATCCATCGGATGTACGTAATCAAAGGGGTGATTTTGGACAAGGCTTGGAAGCACTTGCACAAAGATATTTATTGCAAAGGGAGAACGATGTGTTGAAGAGTTGGAAGAGTGCACTCAATGAGGCAGCAAATTTGGCTGGTTGGGTTTCAAGGAATTACAGGACTGATGCTGACCTAGTGAAAGATATTGTTGAGGACATCATTGTAAAACTTGACATGCACTTATTGTCAATTACCGATTTTCCAGTTGGATTAGAATCCCGTGTGCAAAAACTGATTAAGTTTCTTGATGATCAATCAGGCAGAGGTTGTGTTATAGGGATCTGGGGAATGGGAGGATTGGGTAAAACAACCATGGCCAAATCCATCTACAATAAATTTCGTCGTCAGAAATTCAGGCGAAGTTTCATTGAAACAAATAATAAAGGGCATACTGATTTGCAAGTAAAACTTCTTTCAGATGTCCTACAAACAAAGGTTAAGATACATAGCGTTGCCATGGGGATATCTATGATCGAGAGAAAACTTTTTGGAGAAAGGGCTCTCATTATACTTGATGATGTGACTGAGTTTGAACAATTGAAAACCCTATGTGGAAATTGTAAATGGATTGATCATGGAAGTGTACTCATCATCACAACCAGAGATTTACGCCTGCTTGAAGAACTTAAAGATCACCATGCAGTCTATATATGGAAAATAATGGAAATGGACGAAAATGAGTCCCTTGAGCTTTTTAGTAAGCATGCTTTTAGAGAAGCAAGTCCAACAGAAAACTGGAAGAAACTCTCAATTGATGTAGTTTCTTATTGTGCAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTTCTTACGTTGGAGGAGTAAAGAAGAATGGGAAGATGTATTGTCAACACTAAAGAAAATTCCCGATCATCTTGTTCAAAAAAAATTAAGAATAAGCTTTGATGGTTTACGTAATCACATGGAAAAGGATATATTCCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAGAGCCTATGTTACAGAGATACTAAAGGGCTGTGGACTATGTGCCAGTTTTGGAATAACAGTTCTCATAGAGCGTAGCCTCATAAAAGTTGAAAAGAACAACAAACTTGGAATGCACCCTTTGCTCCGAGATATGGGAAGAGATATAGTTAGTGAAAGATCAACAATTGAACCTGGGAAGCGCCATCGATTATGGTTTCAAAAGGATGTACTTGATGTATTGACAAACAATACTGGGACAGAAACTATTCAGGGATTGGCTATGAAATTACATTTCACCAGCAGAGATTGCTTCGAAGCTTATTCGTTTGAGAAAATGAAGGAATTGAGACTGTTGCAACTTGATCATGTACAACTCTCTGGAAATTATGGGTATCTTTCTAAGCAACTGAAATGGATCTGTTGGCGAGGGTTTCCTTTAAAATACATACCTAACAACTTTCATCTGAAAGGTGTAATTGCGATTGATTTTAAATACAGTAAACTTAGACTACTCTGGAAAACACCCCAGGTTTTTCCGTGGCTGAAATTCCTCAATCTTAGTCACTCCAAGAACTTGACAGAAACCCCTGACTTTTCTAAACTGACAAGTCTTGAAAAGCTCATTCTCAAAAATTGTCCAAGTTTGTGCAAGGTACACCAATCCATCGGAGATCTCCACAATCTTATTTTGATAAATTTGAAGGGCTGTACAAGCTTAAGAAATCTCCCAAGAGAGGTATATAAGTTGAAATCTGTGAAAATTCTGATCCTATCTGGTTGTTCAAAAATTGACAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACTCTAATTGCTGACAATACTGTTGTGAAACAAGTGCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGATATATATCCCTTTGTGGATTTGAAGGATTATCACGTAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAATGAATCCGCTATCTTATATTGGTCATTTCTATGGCACATCATCATCTCTAGTTTCCATGGATATACGTAATAATAATTTTGGTGATCTTGCACCAACGTTTACAAGCCTATCAAATCTTCGCAGTGTTTTGGTGCAATGTGACACGCAAATTGAACTATCTAAACTATGCAGAACAATTCTGGATGATATAAATGGTTCAGATTTTACTGAATTACGAATGACACCATATATATCACAATTTTCAAAGCATTCCTTGAGGTCATATTTGATTGGAATTGGAACTGGAACAGGAACTTACCAAGAAGTCTTCACTACTCTCAACAATAGCATATCTAAGGAATTGGCAACCAACGTGGCTTGTGATGTTTCTCTGCCAGCTGACAATTATCCCTACTGGTTGGCCCATACAAGTGAGGGACATTCCGTGTATTTCACTGTGCCTGAGGATTGTCGCTTGAAGGGAATGATTCTATGTGTTGTATATTTATCAACCCCTGAAATCATGGCAACCGAATGTCTAATTAGTGTCTTGATAGTTAATTACACAAAGTGCACCATCCAGATACACAAGCGAGACACAGTAATTTCCTTTAATGATGAAGATTGGCAGGGCATAATATCACATTTGGGACCTGGAGACGAAGTGGAGATTTTTGTGACTTTTGGGCACAGATTGGTGGTGAAGAACACAGCTGTCTATTTGACGTACGGTGAATCAATTGACATGGAAATAGAGCCTTCGTCCGAGCAAAAGGAAAATGCCCTCATTAGATTCATAAAGAAAATTGTAATGTGTGACTTCTGTGAATTCTGTCAACATAGTTTTCAGTGCTCTCAACTGAACTCAAGGTAG 2991 0.3801 MPSLLRAIEGSKIHIILFSNNYASSKWCLDELVKIMECHRTYGKEVLPVFYNVDPSDVRNQRGDFGQGLEALAQRYLLQRENDVLKSWKSALNEAANLAGWVSRNYRTDADLVKDIVEDIIVKLDMHLLSITDFPVGLESRVQKLIKFLDDQSGRGCVIGIWGMGGLGKTTMAKSIYNKFRRQKFRRSFIETNNKGHTDLQVKLLSDVLQTKVKIHSVAMGISMIERKLFGERALIILDDVTEFEQLKTLCGNCKWIDHGSVLIITTRDLRLLEELKDHHAVYIWKIMEMDENESLELFSKHAFREASPTENWKKLSIDVVSYCAGLPLALEVLGSFLRWRSKEEWEDVLSTLKKIPDHLVQKKLRISFDGLRNHMEKDIFLDVCCFFIGKDRAYVTEILKGCGLCASFGITVLIERSLIKVEKNNKLGMHPLLRDMGRDIVSERSTIEPGKRHRLWFQKDVLDVLTNNTGTETIQGLAMKLHFTSRDCFEAYSFEKMKELRLLQLDHVQLSGNYGYLSKQLKWICWRGFPLKYIPNNFHLKGVIAIDFKYSKLRLLWKTPQVFPWLKFLNLSHSKNLTETPDFSKLTSLEKLILKNCPSLCKVHQSIGDLHNLILINLKGCTSLRNLPREVYKLKSVKILILSGCSKIDKLEEDIVQMESLTTLIADNTVVKQVPFSIVSSKSIGYISLCGFEGLSRNVFPSIIWSWMSPTMNPLSYIGHFYGTSSSLVSMDIRNNNFGDLAPTFTSLSNLRSVLVQCDTQIELSKLCRTILDDINGSDFTELRMTPYISQFSKHSLRSYLIGIGTGTGTYQEVFTTLNNSISKELATNVACDVSLPADNYPYWLAHTSEGHSVYFTVPEDCRLKGMILCVVYLSTPEIMATECLISVLIVNYTKCTIQIHKRDTVISFNDEDWQGIISHLGPGDEVEIFVTFGHRLVVKNTAVYLTYGESIDMEIEPSSEQKENALIRFIKKIVMCDFCEFCQHSFQCSQLNSR* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0685 996 Gene3D - 127 283 IPR027417 -
Gso16g0685 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 383 IPR027417 -
Gso16g0685 996 SUPERFAMILY L domain-like 430 756 - -
Gso16g0685 996 SMART till_3 2 98 IPR000157 GO:0007165
Gso16g0685 996 Gene3D Ribonuclease Inhibitor 491 796 IPR032675 -
Gso16g0685 996 PRINTS Disease resistance protein signature 158 173 - -
Gso16g0685 996 PRINTS Disease resistance protein signature 228 242 - -
Gso16g0685 996 PRINTS Disease resistance protein signature 324 338 - -
Gso16g0685 996 PRINTS Disease resistance protein signature 633 649 - -
Gso16g0685 996 Gene3D - 1 126 IPR035897 -
Gso16g0685 996 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 101 IPR035897 -
Gso16g0685 996 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 6 949 - -
Gso16g0685 996 CDD AAA 136 274 - -
Gso16g0685 996 Pfam TIR domain 2 124 IPR000157 GO:0007165
Gso16g0685 996 Pfam NB-ARC domain 139 365 IPR002182 GO:0043531
Gso16g0685 996 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 949 IPR044974 GO:0006952
Gso16g0685 996 ProSiteProfiles TIR domain profile. 1 124 IPR000157 GO:0007165
Gso16g0685 996 Gene3D - 289 373 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0685 Gso-Chr16 9985816 9989947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0685 7 679 WRKY Transcription Factor Family AT4G12020 29.244 8.03e-74 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0685 - - gmx:100817360 2000.71