Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0683 ATGAAGAATTTTTTAATTGATCGTAAAATCGCCATCGAAGAACAAAAGCGCTTTAGTAATAAAATTACTGAGAGAATGAGGACAGCAAGAGCTGTAAGCCAAGCCGCCAAACAATTCAATGACCTGATCATGCAGTACGACGTGTTCTTGAGCTTTAGAGGAACAGACATTCGTAGTGGTGTCCTCTCACACCTTATAGCCGCTCTCTCAAATGCGGGAGTCAACACTTTCGAGGATGAAAAGTTTGAAAGGGGAGAAAGGATAATGCCCTCACTATTGCGAGCCATAGCAGGGTCTAAGATACACATCATCCTTTTTTCCAATAACTATGCTTCATCTAAATGGTGTCTTGATGAGCTGGTCAAAATCATGGAATGCCATAGAACTTACGGCAATGAGGTTTTACCCGTATTTTACAATGTTGATCCATCGGATGTACGTAATCAAAGGGGTGATTTTGGACAAGGCTTGGAAGCACTTGCACAAAGATATTTATTGCAAGGGGAGAACGATGTGTTGAAGAGTTGGAAGAGTGCACTCAATGAGGCAGCAAATTTGGCTGGTTGGGTTTCAAGGAATTACAGGACTGATGCTGACCTAGTGGAAGATATTGTTGAGGACATCATTGAAAAACTTGACATGCACTTATTGCCAATTACCGATTTTCCAGTTGGATTAGAATCCCGTGTGCCAAAACTGATTAAGTTTGTTGATGATCAATCAGGCAGAGGTTGTGTTATAGGGATCTGGGGAATGGGTGGATTGGGTAAAACAACCATTGCCAAATCCATCTACAATGAATTTCGTCGTCAGAGATTCAGGCGAAGTTTCATTGAAACAAATAATAAAGGGCATACTGATTTGCAAGAAAAACTTCTTTCAGATGTCCTAAAAACAAAGGTTAAGATACATAGCGTTGCCATGGGGATATCTATGATTGAGAAAAAACTTTTTGCAGAAAGAGCTCTCATTATACTTGATGATGTGACTGAGTTTGAACAATTGAAAGCCCTATGTGGAAATTGTAAATGGATTGATCGTGAAAGTGTACTCATCATCACAACCAGAGATTTGCGCCTGCTTGAAGAACTTAAAGATCACCATGCAGTCCATATATGGAAAATAATGGAAATGGACGAGAATGAGTCCCTTGAGCTTTTTAGTAAGCATGCTTTTAGAGAAGCAAGTCCAACAGAAAACTGGAATAAACTCTCAATCGATGTAGTTGCTTATTGTGCAGGACTACCACTAGCTCTTGAAATCCTTGGATCTTACTTACGTTGGAGGACGAAAGAAGAATGGGAAAGTGTATTGTCAAAACTGAAGAAAATTCCCAATTATAAAGTTCAAGAAAAATTAAGAATAAGCTTTGATGGTTTACGTGATCCCATGGAAAAGGATATATTCCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAGAACCTATGTTACAGAGATACTAGATGGCTGTGGACTACATGCCAGTATTGGAATAAAAGTTCTCATAGAGCATAGCCTCATAAAAGTTGAAAAGAACAAACTTGGAATGCACCCTTTGCTACGAGATATGGGAAGAGAGATAGTTTGTGAAAGTTCAAAAAATGAACCTGGGAAGCGCAATCGATTATGGTTTCAAAAGGATGTACTTGATGTATTGACAAACAATACTGGGACAGAAACTATTCAGGGATTGGCTGTGAAATTACATTTCACCAGCAGAGATTCCTTCGAAGCTTATTCTTTTGAGAAAATGAAGGGATTGAGACTGTTGCAACTTGATCATGTACAACTCTCTGGAAATTATGGGTATCTTTCTAAGCAACTGAAATGGATCTGTTGGCGAGGGTTTCCTTTAAAATACATACCTAACAACTTTCATCTGGAAGGTGTAATTGCGATTGATTTTAAATACAGTAAACTTAGACTACTCTGGAAAACACCCCAGGTTTTGCCGTGGCTGAAATTCCTCAATCTTAGTCACTCCAAGAACTTGACAGAAACCCCTGACTTTTCTAAACTGACAAGTCTTGAAAAGCTCATTCTCAAAAATTGTCCAAGTTTGTGCAAGGTACACCAATCCATCGGAGATCTCCACAATCTTATTTTGATAAATTTGAAGGGCTGTACAAGCTTAAGAAATCTCCCAAGAGAGGTATATAAGTTGAAATCTGTGAAAATTCTGATCCTATCTGGTTGTTCAAAAATTGACAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACTCTAATTGCTGACAATACTGCTGTGAAACAAGTGCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGATATATATCCCTTTGTGGATTTGAAGGATTATCTCGTAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAATGAATCCGCTATCTTATATTGGTCATTTCTATGGCACATCATCATCTCTAGTTTCCATGGATATACATAATAATAATTTTGGTGATCTAGCACCAACGTTTAGAAGCCTCTCAAATCTTCGCAGTGTTTTGGTGCAATGTGACACAGAAATTGAACTATCTAAACTATGCAGAACAATTCTGGATGATATAAATGGTTCAGATTTTACTGAATTACGAATGACACCATATATATCACAATTTTCAAAGCATTCCTTGAGGTCATATTCATATTTGATTGGAATTGGAACTGGAACTGGAACTTACCAAGAAGTCTTCACTACTCTCAACAATAGCATATCTAAGGAATTGGCAACCAACGTGGCTTGTGATGTTTCTCTCCCAGCCGACAATTATCCCTTTTGGTTGGCCCATACAAGTGAGGGACATTCCGTGTATTTCACTGTGCCTGAGGATTGTCGCTTGAAGGGAATGATTCTATGTGTTGTATATTTATCAACCCCTGAAATCATGGCATCCGAATGTCTAATTAGTGTCTTGATAGTTAATTACACAAAGTGCACCATCCAGATACACAAGCGAGACACAGTAATTTCCTTTAATGATGAAGATTGGCAGGGCATAATATCACATTTGGGACCTGGAGACGAAGTGGAGATTTTTGTGACTTTTGGGCATAGATTGGTGGTGAAGAAGACAGCTGTCTATTTGACGTACGGTGAATCAATTGACATGGAAATAGAGCCTTCGCCCGAGCAAAAGGAAAATGCCCTCATTAGATTCATAAAGAAAATTGTAACGTGTGACTTCTGTGAATTCTGTCAACATAGTGTTCAGTGCTCTCAACTGAACTCAAGGTAG 3258 0.3849 MKNFLIDRKIAIEEQKRFSNKITERMRTARAVSQAAKQFNDLIMQYDVFLSFRGTDIRSGVLSHLIAALSNAGVNTFEDEKFERGERIMPSLLRAIAGSKIHIILFSNNYASSKWCLDELVKIMECHRTYGNEVLPVFYNVDPSDVRNQRGDFGQGLEALAQRYLLQGENDVLKSWKSALNEAANLAGWVSRNYRTDADLVEDIVEDIIEKLDMHLLPITDFPVGLESRVPKLIKFVDDQSGRGCVIGIWGMGGLGKTTIAKSIYNEFRRQRFRRSFIETNNKGHTDLQEKLLSDVLKTKVKIHSVAMGISMIEKKLFAERALIILDDVTEFEQLKALCGNCKWIDRESVLIITTRDLRLLEELKDHHAVHIWKIMEMDENESLELFSKHAFREASPTENWNKLSIDVVAYCAGLPLALEILGSYLRWRTKEEWESVLSKLKKIPNYKVQEKLRISFDGLRDPMEKDIFLDVCCFFIGKDRTYVTEILDGCGLHASIGIKVLIEHSLIKVEKNKLGMHPLLRDMGREIVCESSKNEPGKRNRLWFQKDVLDVLTNNTGTETIQGLAVKLHFTSRDSFEAYSFEKMKGLRLLQLDHVQLSGNYGYLSKQLKWICWRGFPLKYIPNNFHLEGVIAIDFKYSKLRLLWKTPQVLPWLKFLNLSHSKNLTETPDFSKLTSLEKLILKNCPSLCKVHQSIGDLHNLILINLKGCTSLRNLPREVYKLKSVKILILSGCSKIDKLEEDIVQMESLTTLIADNTAVKQVPFSIVSSKSIGYISLCGFEGLSRNVFPSIIWSWMSPTMNPLSYIGHFYGTSSSLVSMDIHNNNFGDLAPTFRSLSNLRSVLVQCDTEIELSKLCRTILDDINGSDFTELRMTPYISQFSKHSLRSYSYLIGIGTGTGTYQEVFTTLNNSISKELATNVACDVSLPADNYPFWLAHTSEGHSVYFTVPEDCRLKGMILCVVYLSTPEIMASECLISVLIVNYTKCTIQIHKRDTVISFNDEDWQGIISHLGPGDEVEIFVTFGHRLVVKKTAVYLTYGESIDMEIEPSPEQKENALIRFIKKIVTCDFCEFCQHSVQCSQLNSR* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0683 1085 Gene3D - 43 209 IPR035897 -
Gso16g0683 1085 Gene3D - 210 372 IPR027417 -
Gso16g0683 1085 SUPERFAMILY L domain-like 517 842 - -
Gso16g0683 1085 Gene3D - 377 461 IPR042197 -
Gso16g0683 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 48 1038 IPR044974 GO:0006952
Gso16g0683 1085 Pfam NB-ARC domain 228 444 IPR002182 GO:0043531
Gso16g0683 1085 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 48 1038 - -
Gso16g0683 1085 PRINTS Disease resistance protein signature 246 261 - -
Gso16g0683 1085 PRINTS Disease resistance protein signature 316 330 - -
Gso16g0683 1085 PRINTS Disease resistance protein signature 412 426 - -
Gso16g0683 1085 PRINTS Disease resistance protein signature 720 736 - -
Gso16g0683 1085 SMART till_3 45 186 IPR000157 GO:0007165
Gso16g0683 1085 ProSiteProfiles TIR domain profile. 44 212 IPR000157 GO:0007165
Gso16g0683 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 471 IPR027417 -
Gso16g0683 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 189 IPR035897 -
Gso16g0683 1085 Pfam TIR domain 45 212 IPR000157 GO:0007165
Gso16g0683 1085 Gene3D Ribonuclease Inhibitor 566 872 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0683 Gso-Chr16 9955714 9974641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0683 46 766 WRKY Transcription Factor Family AT4G12020 29.427 2.45e-77 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0683 - - gmx:100817360 1876.29