Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0679 ATGAACGACGGCGGAAGCCGCCAAAGCGACAACGCAAAGCCACTCGATTTGGAAAACCTGAGAGTTGTCTCCGCCGTGGGGCGCGGCGCCAAGGGCGTCGTATTCCTCGCGAGGACCGGTGACCGGTCTTCGGAAGAGTGCGTGGCGCTGAAAGTGATATCGAAGGCGCTGATCATTCAAAAGAAGGCGAAGTTAAACGACACGGAGGAGTACACGAGGGTGTCGTTTGAAGAGCAAGTGCTGCGTCGTTTCGACCATCCGCTTCTGCCTAGGTTAAGAGGGGTTTTCGAAACCGATAGGGTCGTTGGGTTCGCCATTGATTACTGTCACGGTGGCACGCTCCGTTCGCTAAGGAAGAAACAGACTGAGAAAATGTTCTCTGATGACACCATCAGGTTTTACGCTGCGGAATTGGTTCTCGCATTGGAGTATTTGCACAAATTGGGAATAGTGTACAGAGATTTGAAGCCAGATAATGTGATGATTCAAGAAAACGGCCACATAATGTTGGTCGATTTTGACCTATCCAAAAAGCTAAACCCTAAATTCCCTTACTCATTGAGTCACAACTCGTCCTCGAATCCTAACTCGGAGAAAAAACACACAAGGAGGCACTGGTTAACGCGATTCTACAAATTCTGCAACTGGGTAATCTCACCCTACGACTCGGACTCGGAGCCCTCACTCAACAACGTCAACTCAGCACGCCACATCGAGTCCAACTTAGTCGAAAAATCAAACTCCTTCGTAGGAACAGAAGAGTACGTGGCTCCCGAAATAGTTTCGGGGAAAGGTCATGACTTCAGCATTGACTGGTGGTCATACGGCATCGTTTTGTACGAGATGTTGTACGGAACAACTCCGTTTAAGGGCGCCAATAGGAAGGAAACGTTTTACCGCATCTTAACGAAGGAGCCAGAGCTAACAGGGGAGAAGACGGCGTTACGGGATTTGATTGGGAAACTGCTGGAGAAAGATCCTGACCGTCGGATCAGGGTTGATGAGATCAAGGGCCATGATTTCTTCAAGGGGGTTAAGTGGGACATGGTGTTGCGCATTGTGAGGCCACCTTATATTCCCGAAAATGAGGTCAAGAACAAAGTGGGGTTCGGCAAAAGCGACGTGGAAGTGTTCGTGGACAAGGTGTTTTTTCCAACAGGTGATGATGGAGGAAGAGAGAAAACAAAAATGGTGTTGGAAAAGAAGGATAGTAATAATAATGGTGAGAATATTAACAATATGGTGAAAGTTGATGAATTGAGTCATGTTCCCACCGAGAAGATTGACGATTTTTTGATTTTTTGA 1305 0.4759 MNDGGSRQSDNAKPLDLENLRVVSAVGRGAKGVVFLARTGDRSSEECVALKVISKALIIQKKAKLNDTEEYTRVSFEEQVLRRFDHPLLPRLRGVFETDRVVGFAIDYCHGGTLRSLRKKQTEKMFSDDTIRFYAAELVLALEYLHKLGIVYRDLKPDNVMIQENGHIMLVDFDLSKKLNPKFPYSLSHNSSSNPNSEKKHTRRHWLTRFYKFCNWVISPYDSDSEPSLNNVNSARHIESNLVEKSNSFVGTEEYVAPEIVSGKGHDFSIDWWSYGIVLYEMLYGTTPFKGANRKETFYRILTKEPELTGEKTALRDLIGKLLEKDPDRRIRVDEIKGHDFFKGVKWDMVLRIVRPPYIPENEVKNKVGFGKSDVEVFVDKVFFPTGDDGGREKTKMVLEKKDSNNNGENINNMVKVDELSHVPTEKIDDFLIF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0679 434 PANTHER FLIPPASE KINASE 1-RELATED 2 405 - -
Gso16g0679 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Gso16g0679 434 ProSiteProfiles Protein kinase domain profile. 20 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0679 434 Pfam Protein kinase domain 245 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0679 434 Pfam Protein kinase domain 22 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0679 434 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 2 405 - -
Gso16g0679 434 SUPERFAMILY Protein kinase-like (PK-like) 18 362 IPR011009 -
Gso16g0679 434 Gene3D Transferase(Phosphotransferase) domain 1 113 181 - -
Gso16g0679 434 Gene3D Phosphorylase Kinase; domain 1 20 112 - -
Gso16g0679 434 SMART serkin_6 20 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0679 434 Gene3D Transferase(Phosphotransferase) domain 1 243 361 - -
Gso16g0679 434 ProSiteProfiles AGC-kinase C-terminal domain profile. 343 434 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0679 Gso-Chr16 9830650 9833076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0679 1 416 AGC Kinase Gene Family AT3G25250 55.238 1.26e-147 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso16g0679 Pkinase 3.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0679 K20714 - gmx:100802487 868.611