Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0672 ATGGTTTGTCAGGCTTGGGTTATTCATGGTGACTATCACTGCTTTGATTTGATGGTTGTCTGCTATTCCTTGCTATCTACATATGCTTTCATGATTTTGCATATTCTCTACAGTGGTGAGAAAACCTATGGTTCAACAACTTTTGCTGTGAATTCACCTTATTTCCTTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGTAGTTGGAAAGCAAGCGGTGGCATTAAGGATTTCAGCAGACACAACAACATTTGTAGGCTACAAATTCTTAGGAGCACAAGACACAATTTATGATCATTTGGGAAAACATTTTTATAAGGATTGTTACATCGAAGGCTCTGTTGATTTCATATTTGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCCATTGCACAGATTATAGGGGTCGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACGGGGTTCTCAGTTGTGAACTCCAAGGTCACGGGATCAAGGGCACTATACCTTGGAAGGGCTTGGGGACCCTTTTCTCGCGTGGTCTTTGCCTACACATATATGGAAAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGATCCTAACCGTGAAATATGTTGGCCTTGA 645 0.4264 MVCQAWVIHGDYHCFDLMVVCYSLLSTYAFMILHILYSGEKTYGSTTFAVNSPYFLAKNITFQNTTPVPAPGVVGKQAVALRISADTTTFVGYKFLGAQDTIYDHLGKHFYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQIIGVVTAQGRSSMLEDTGFSVVNSKVTGSRALYLGRAWGPFSRVVFAYTYMENIIIPKGWYNWGDPNREICWP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0672 214 Pfam Pectinesterase 38 206 IPR000070 GO:0030599|GO:0042545
Gso16g0672 214 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 211 - -
Gso16g0672 214 SUPERFAMILY Pectin lyase-like 37 209 IPR011050 -
Gso16g0672 214 ProSitePatterns Pectinesterase signature 2. 116 125 IPR033131 -
Gso16g0672 214 Gene3D - 33 213 IPR012334 -
Gso16g0672 214 PANTHER PECTINESTERASE 41 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0672 Gso-Chr16 9483868 9487824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0672 37 210 Carbohydrate Esterase AT1G05310 49.451 1.26e-59 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0672 K01051 - gmx:106796378 385.185