Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0643 ATGGAGTGTGCGAGAAAAACCATCACCACCAAATTTATGAAATCATCCAAATTCTTCTCCAAAGTGGTTCGCATTTCGGTGACGGATCAAGATGCCACAGACTCCTCCAGTGATGAAGAGGCAGAACGTGTCAAAGTGAAGAAGATAGTGGTTAATGAAATTGTTTGTGTCAACAACAACAAAAAAAGACACAACAATGACAACAGTGGTTGTTGCTATTCAACCAAAGATAATGAAAGTCTCAAACAACAACCACAGCAAAGCCTTGTTCCATTAGGTGAGGAGGGCTACATGGACAGCAAACAAAGTCTCAAACAACACAAGTTTCGCGGTGTGCGGCAGCGGCCTTGGGGCCGGTGGGCCGCCGAGATAAGAGACCCTTTGAGGCGAACGCGGGTTTGGCTTGGCACCTTCGACACTGCTGAGGAGGCTGCTATGGTTTACGACAAAGCCGCTATTAAATTCAGAGGCGCTGAAGCTGTCACCAATTTCATCAAACCGCCACTGAAAGATGATGCCGTGTCTCTTGAAATATGTGAGAGTGTTGTTAGCGGAACGAGTTGTGCATGTGATTCACCCACTTCAGTTCTCGTCTTTCAGCCTTGGATGGAACCACCATTGTTGGAAGAAACCTTCAAAGAAGTTTTTAGTGGGTTAACTGATGGTTATGATGATGGTTTCTTGTTTTCCAATGATGCACTTTGTGATCAACCTCTTCCTACGACGTTTTCTAACGCTGATTGCATTATTCCATTGGATGAAGATTTTGAGTCATGTAAATGGGTTGTGGATAATTATTTCAGTGATGATACTTCATCGCAATGA 825 0.44 MECARKTITTKFMKSSKFFSKVVRISVTDQDATDSSSDEEAERVKVKKIVVNEIVCVNNNKKRHNNDNSGCCYSTKDNESLKQQPQQSLVPLGEEGYMDSKQSLKQHKFRGVRQRPWGRWAAEIRDPLRRTRVWLGTFDTAEEAAMVYDKAAIKFRGAEAVTNFIKPPLKDDAVSLEICESVVSGTSCACDSPTSVLVFQPWMEPPLLEETFKEVFSGLTDGYDDGFLFSNDALCDQPLPTTFSNADCIIPLDEDFESCKWVVDNYFSDDTSSQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0643 274 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Gso16g0643 274 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gso16g0643 274 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Gso16g0643 274 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Gso16g0643 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 273 - -
Gso16g0643 274 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Gso16g0643 274 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Gso16g0643 274 PANTHER - 21 273 - -
Gso16g0643 274 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Gso16g0643 274 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0643 Gso-Chr16 8286525 8287570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0643 3 203 AP2-EREBP Transcription Factor Family AT4G27950 40.529 3.16e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g0643 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0643 - - gmx:100779645 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0643 16 8286525 8287570 Gso3g0818 3 29737091 29738254 GST
Gso16g0643 16 8286525 8287570 Gso1g0677 1 21495270 21497410 PCT