Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0637 ATGATCAACACCAACATCACTCAAACACTGCCACCTTTCCTTTGTGACCTCACAAACCTCACACATGTTGATTTTCAGTGGAATTTCATTCCTGGTGAGTTCCTAAAATCTCTCTACAAATGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAATTACTTTGTTGGCAAGATTCCTGATGATATTGACAACTTGGCTAGCCTGAGTTTTCTTAGCCTTAGTGGCAACAACTTCTCTGGTGATATTCCAACCAGCATTGGGAGGTTAAAGGAACTAAGAAATCTTCAACTTTATCAGTGTCTTCTCAATGGTACTTTCCCTGCTGAAATTGGCAATTTGTCCAACCTTGAGTCCTTGTATGTGTTCTCAAACCACATGCTCCCTCCCACAAAGTTGCCATCAAGCTTGACCCAGTTGAACAAATTGAAGGTCTTTCATATGTATGAGTCCAACTTGGTAGGGGAAATCCCTGAAACCAATGGACACATGGTGGCATTGGAGAAATTGGATTTCCTTTCCGGGGAGATACCTAGAGTGGTTGAAGCATTCAACTTGACAGAACTTGATCTTTCAGAGAATATACTTAGTGGGAAAATACCTGATGATTTGGGAAGGCTCAATAACTTAAAATACTTGAATTTATATAGCAATCAGTTATTTGGGAATGTACCAGAAAGCATTGCTCGTCTGCCAGCTCTGACGGACTTTGTTGTTTTTCTCAACAATTTATCAGGTACTCTTCCTCTAGACTTCGTTCGGTTCTCAAAGCTTGAAACATTTCAGATTGCATCTAATAGTTTCACAGGAAGGTTGCCAGAGAACTTGTGCTACCATGGAAGTTTAGTAGGTTTAACTGCTTATGACAATAACCTGAGTGGGAAGTTGCCTGAATCTCTAGGAAGTTGCAGTAGCCTGAATATTCTAAGGGTTGAAAACAATAATCTTTCTGGTAATGTTCCTAGTGGTCTATGGACATCGATGAACTTGGAAAGATTTATGATAAATGAAAACAAGTTCACTGGTCAGCTTCCTGAAAGATTATCTTGGAATGTTTCAGTCATGTCCATAAGTTACAATCAGTTTTCCGGTAGAATTCCCCTCGGAGTGTCTTCCTTGAAGAATGTTGTGATTTTCAATGCCAGTAACAACCTCTTCAATGGTAGTATTCCACTGGAGCTAACATCTCTTCTCCATCTAACAACTCTTCTGCTTGATCATAACCAGCTCACAGGGTCACTTCCATCAGATATAATATCATGGAAGTCCCTAATAACTCTAGATTTGAGCCACAATCAACTCTCTGGAGTACTCCCAGATGTAATTGCTCAGTTACCTGGCCTTAATATTTTGGATTTGTCAGAAAACAAAATCTCTGGTCAAATTCCACTTCAACTAGCCCTTAAGAGACTCACAAATCTCAATTTGTCCTCCAATCTTTTGACAGGGAGGATTCCAAGTGAATTAGAAAACCTTGCTTATGCCAGAAGCTTCTTGAACAATTCTGGTCTCTGTGCTGATAGTAAAGTACTAAACCTTACCTTGTGCAATTCTAGGCCTCAAAGGGCAAGAATTGAAAGAAGATCTGCATCTTATGCTATAATCATAAGTTTGGTGGTAGGAGCCTCCTTACTGGCTTTGTCGTCATCATTCTTGATGATCAGAGTTTACAGAAAAAGAAAGCAGGAAATGAAAAGGTCATGGAAGCTCACTTCCTTTCAGAGGCTGAGTTTCACAAAAACAAATATTGTGTCCTCAATGTCAGAACACAATATTATTGGCAGTGGTGGGTATGGTGCAGTATATCGTGTCGTTGTTGATGATTTAAATTATGTTGCGGTGAAAAAGATATGGAGTAGCAGAAAATTAGAGGAGAAGCTTGCAAATTCATTTCTTGCAGAAGTTGAAATATTGAGCAATATTCGTCATAACAACATTGTAAAGTTGCTATGCTGCATTTCCAATGAGGATTCTCTGCTCCTTGTCTATGAGTAG 1992 0.3951 MINTNITQTLPPFLCDLTNLTHVDFQWNFIPGEFLKSLYKCSKLEYLDLSQNYFVGKIPDDIDNLASLSFLSLSGNNFSGDIPTSIGRLKELRNLQLYQCLLNGTFPAEIGNLSNLESLYVFSNHMLPPTKLPSSLTQLNKLKVFHMYESNLVGEIPETNGHMVALEKLDFLSGEIPRVVEAFNLTELDLSENILSGKIPDDLGRLNNLKYLNLYSNQLFGNVPESIARLPALTDFVVFLNNLSGTLPLDFVRFSKLETFQIASNSFTGRLPENLCYHGSLVGLTAYDNNLSGKLPESLGSCSSLNILRVENNNLSGNVPSGLWTSMNLERFMINENKFTGQLPERLSWNVSVMSISYNQFSGRIPLGVSSLKNVVIFNASNNLFNGSIPLELTSLLHLTTLLLDHNQLTGSLPSDIISWKSLITLDLSHNQLSGVLPDVIAQLPGLNILDLSENKISGQIPLQLALKRLTNLNLSSNLLTGRIPSELENLAYARSFLNNSGLCADSKVLNLTLCNSRPQRARIERRSASYAIIISLVVGASLLALSSSFLMIRVYRKRKQEMKRSWKLTSFQRLSFTKTNIVSSMSEHNIIGSGGYGAVYRVVVDDLNYVAVKKIWSSRKLEEKLANSFLAEVEILSNIRHNNIVKLLCCISNEDSLLLVYE* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0637 663 Pfam Protein kinase domain 588 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0637 663 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515
Gso16g0637 663 Pfam Leucine Rich Repeat 208 228 IPR001611 GO:0005515
Gso16g0637 663 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Gso16g0637 663 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 172 663 - -
Gso16g0637 663 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 171 - -
Gso16g0637 663 Gene3D Ribonuclease Inhibitor 351 418 IPR032675 -
Gso16g0637 663 Gene3D Ribonuclease Inhibitor 419 503 IPR032675 -
Gso16g0637 663 ProSiteProfiles Protein kinase domain profile. 586 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0637 663 PRINTS Leucine-rich repeat signature 423 436 - -
Gso16g0637 663 PRINTS Leucine-rich repeat signature 444 457 - -
Gso16g0637 663 Gene3D Phosphorylase Kinase; domain 1 567 663 - -
Gso16g0637 663 Gene3D Ribonuclease Inhibitor 244 350 IPR032675 -
Gso16g0637 663 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 171 - -
Gso16g0637 663 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 172 663 - -
Gso16g0637 663 SUPERFAMILY Protein kinase-like (PK-like) 571 663 IPR011009 -
Gso16g0637 663 Pfam Leucine rich repeat 37 78 IPR001611 GO:0005515
Gso16g0637 663 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Gso16g0637 663 SUPERFAMILY L domain-like 4 224 - -
Gso16g0637 663 ProSitePatterns Protein kinases ATP-binding region signature. 592 615 IPR017441 GO:0005524
Gso16g0637 663 SMART LRR_typ_2 421 443 IPR003591 -
Gso16g0637 663 SMART LRR_typ_2 396 420 IPR003591 -
Gso16g0637 663 SMART LRR_typ_2 206 230 IPR003591 -
Gso16g0637 663 SMART LRR_typ_2 65 89 IPR003591 -
Gso16g0637 663 SMART LRR_typ_2 113 139 IPR003591 -
Gso16g0637 663 SMART LRR_typ_2 467 491 IPR003591 -
Gso16g0637 663 SUPERFAMILY RNI-like 182 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0637 Gso-Chr16 8138722 8140836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0637 3 663 Receptor kinase-like Gene Family AT5G25930 47.482 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0637 Pkinase 5.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0637 - - gsj:114391145 1245.34