Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0635 ATGACAGTACCATTTTACTATTGTTATTATTTATCCATATTCCTAATCCTGAGCCATGTACACTCTCAGACTCAGCTGCAAGATCAAGAACATGCAGTCCTAATGAATATAAAGCGGCACCTAAAAAACCCTTCATTCCTCAGTCACTGGACAACATCAAACACTGCCTCTCACTGCACTTGGCCAGAGATCACATGCACCAGTGACTACTCAGTCACTGGATTGACTCTGGTCAACAGCAACATCACTCAAACACTACCACCTTTCATGTGTGACCTCAAAAATCTCACACTTGTTAATTTCAGTAGGAATTTCATTCCAGGGGAGTTCCCAACATTTCTCTACAAATGTTCCAAGCTGGTTTACCTCGACCTCGAAATGAACGATTTTTCGGGCACCATTCCTGATGACATAGACAACTTGGTTAACTTGCAGCATCTTAATCTCGGTTCCACAAGCTTTAGTGGGGACATTCCTGCAAGCATTGGAAGGTTAAAGGAACTGAAAATGCTTCAACTTCACTATTGTCTATTCAATGGTACTTTCCCTTATGAGAGTATTGCCAACTTGTTCGATCTTGAATTCTTGGATATGTCCTCTAACTTGGTGCTCCCTCCTTCCAAGCTCTCGTCAAGCTTGACCCGGTTGAAAAAATTGAAGTTCTTTCACATGTACAGTTCCAACCTGTTTGGGGAAATCCCTGAAACCATTGGAGAAATGGTGGCTTTGGAGAACTTGGATTTATCGCGAAGCAATTTAACTGGACACATTCCTAGAGGCTTGTTCATGCTCAAGAATTTGAGCACACTGTACCTTTTCCAGAACAAGCTCTCTGGAGAGATACCTGGTGTGGTTGAAGCATCGAATTTGACAGAAATCGATCTTGCAGAGAACAATCTTGAGGGGAAAATACCTCATGATTTTGGGAAGCTCCAAAAGCTAACACTGTTGAGTTTGTCTCTCAATAACTTGTCAGGGGAGATACCACAAAGCGTAGGCCGTATTCCATCTCTGATATATTTTCAGGTCATGTTCAATAACTTGTCAGGTATTCTTCCTCCTGATTTTGGTCTCTACTCGGAGCTTAAAACATTTTTGGTTGCAAACAACAGTTTTACTGGAAGGCTCCCAGAAAACTTGTGCTATCATGGTCAGTTACTTAATTTAACTACTTATGATAATTATCTGAGTGGTGAATTGCCAGAATCAATTGGCCACTGTAGTAGCCTGAAGGATTTAAAAATTTACAGTAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTCAATTTGTCAAATTTCATGGTGAGTTATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCCCAAGTATTTCGCGCTTGGAGATAAGTCACAATCGGTTTTTTGGTAGGATTCCAACTGGTGTATCTTCATGGACTAATGTGGTTGTTTTTAAAGCAAGTGAGAACGACCTTAATGGGAGTGTTCCAAAAGGTTTAACATCTCTTCCCAAGCTAACAACTCTATTGCTTGATCATAACCAGCTCACAGGGCCACTTCCATCAGATATCATATCATGGCAATCCCTTGTAACTCTAAATTTGAGCCAAAACAAACTCTCTGGACATATCCCAGATTCAATTGGTCTGTTACCCGTCCTTAGCGTACTCGACCTGTCAGAAAATCAATTCTCTGGTGAAGTTCCTTCTAAACTTCCCAGAATCACCAATCTCAATCTATCCTCCAATTATTTGACAGGGAGGGTTCCAAGTGAATTTGACAATCTTGCTTATGACACAAGCTTTTTGGACAATTCTGGCCTCTGTGCTAATACTCCAGCACTGAAACTTAGGCCGTGCAATGTTGGCTTTGAAAGGCCATCCAAAGGCTCTTCTTGGTCTCTTGCTTTGATTATGTGCCTGGTAGCAATAGCCTTGTTGCTGGTTTTGTCGATTTCACTCTTGATTATCAAACTTCACCGAAGAAGGAAACGAGGATTTGATAACTCATGGAAGCTCATTTCCTTTCAAAGGTTGAGTTTCACTGAATCAAGCATAGTGTCATCAATGTCAGAACATAATGTTATTGGAAGTGGTGGATTTGGTACAGTATACCGTGTTCCGGTTGATGCTTTAGGCTATGTTGCTGTGAAAAAGATCTCCAGTAACAGAAAGTTAGACCACAAGCTAGAGAGCTCATTTCGCGCAGAGGTTAAAATACTGAGCAACATTCGTCACAAAAACATTGTGAAATTGTTGTGCTGCATCTCTAATGAGGATTCTATGCTCCTTGTTTATGAGTATTTGGAAAACTGTAGCCTAGATAGGTGGCTGCACAATAAGAGCAAATCACCACCAGCTGTGTCAGGTTCAGCGCATCATTTTGAACTTGATTGGCAAAAGAGATTGCAAATTGCCACTGGTGTTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCGCCACCGATTGTTCATCGAGATATAAAAACAAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCCGGGGGAACTTGCTACCATGTCATCTGTTATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACGCGAGTCAGCGAGAAGATTGATGTATTCAGCTTTGGGGTTATACTACTGGAGTTGACAACTGGTAAAGAAGCTAACTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGCCAAATTATTGTAGGAAGCAACATAGAAGAGCTGCTAGACATTGATTTCATGGATCCAAGTTACAAGAATGAAATGTGCAGTGTTTTCAAACTTGGAGTGTTGTGTACTTCAACACTTCCTGCTAAAAGGCCTTCCATGAAGGAGGTGCTACACATATTGCTCCGCTGTGGAGAAGGATTTGCGTTTGGAGAGGGGAATGTTAGGCAATATGATGGTGTTCCCCTTCTTAAGAATTCAAAATGGGAGAGTAGTTTGGATGCTGTTGACAATGATAGTGATAGTGACTAG 3036 0.414 MTVPFYYCYYLSIFLILSHVHSQTQLQDQEHAVLMNIKRHLKNPSFLSHWTTSNTASHCTWPEITCTSDYSVTGLTLVNSNITQTLPPFMCDLKNLTLVNFSRNFIPGEFPTFLYKCSKLVYLDLEMNDFSGTIPDDIDNLVNLQHLNLGSTSFSGDIPASIGRLKELKMLQLHYCLFNGTFPYESIANLFDLEFLDMSSNLVLPPSKLSSSLTRLKKLKFFHMYSSNLFGEIPETIGEMVALENLDLSRSNLTGHIPRGLFMLKNLSTLYLFQNKLSGEIPGVVEASNLTEIDLAENNLEGKIPHDFGKLQKLTLLSLSLNNLSGEIPQSVGRIPSLIYFQVMFNNLSGILPPDFGLYSELKTFLVANNSFTGRLPENLCYHGQLLNLTTYDNYLSGELPESIGHCSSLKDLKIYSNEFSGSIPSGLWTFNLSNFMVSYNKFTGELPERLSPSISRLEISHNRFFGRIPTGVSSWTNVVVFKASENDLNGSVPKGLTSLPKLTTLLLDHNQLTGPLPSDIISWQSLVTLNLSQNKLSGHIPDSIGLLPVLSVLDLSENQFSGEVPSKLPRITNLNLSSNYLTGRVPSEFDNLAYDTSFLDNSGLCANTPALKLRPCNVGFERPSKGSSWSLALIMCLVAIALLLVLSISLLIIKLHRRRKRGFDNSWKLISFQRLSFTESSIVSSMSEHNVIGSGGFGTVYRVPVDALGYVAVKKISSNRKLDHKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVYEYLENCSLDRWLHNKSKSPPAVSGSAHHFELDWQKRLQIATGVAHGLCYMHHDCSPPIVHRDIKTSNILLDAQFNAKVADFGLARMLMKPGELATMSSVIGSFGYMAPEYVQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRQIIVGSNIEELLDIDFMDPSYKNEMCSVFKLGVLCTSTLPAKRPSMKEVLHILLRCGEGFAFGEGNVRQYDGVPLLKNSKWESSLDAVDNDSDSD* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0635 1011 ProSiteProfiles Leucine-rich repeat profile. 526 548 IPR001611 GO:0005515
Gso16g0635 1011 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Gso16g0635 1011 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 1000 - -
Gso16g0635 1011 Pfam Protein kinase domain 689 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0635 1011 Gene3D Transferase(Phosphotransferase) domain 1 766 976 - -
Gso16g0635 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Gso16g0635 1011 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Gso16g0635 1011 Gene3D Phosphorylase Kinase; domain 1 669 765 - -
Gso16g0635 1011 SUPERFAMILY Protein kinase-like (PK-like) 681 969 IPR011009 -
Gso16g0635 1011 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0635 1011 SMART LRR_typ_2 500 524 IPR003591 -
Gso16g0635 1011 SMART LRR_typ_2 548 576 IPR003591 -
Gso16g0635 1011 SMART LRR_typ_2 240 264 IPR003591 -
Gso16g0635 1011 SMART LRR_typ_2 311 335 IPR003591 -
Gso16g0635 1011 SMART LRR_typ_2 141 165 IPR003591 -
Gso16g0635 1011 SUPERFAMILY RNI-like 287 592 - -
Gso16g0635 1011 SMART serkin_6 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0635 1011 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 1000 - -
Gso16g0635 1011 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Gso16g0635 1011 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Gso16g0635 1011 SUPERFAMILY L domain-like 40 373 - -
Gso16g0635 1011 Gene3D Ribonuclease Inhibitor 286 618 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0635 Gso-Chr16 8114270 8118223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0635 24 973 Receptor kinase-like Gene Family AT5G25930 50.521 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0635 Pkinase 7.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0635 - - gmx:100819744 1936