Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0630 ATGGGTTCTCCAAAAATGGATGAGAGTGAGACACAAAAGGTAGACATGGGAAGAAAAGAGAGGGCTTCCATAGCAACTATTTTGAGATATTCTGATTGGATTGATGTTGTGCTCATGCTAATGGGAGCTGTGGGAGCAATAGGAGACGGCATGTCCACAAATGTTTTGTTGCTGTTTGCTAGCCGTATTATGAACAGCTTAGGTTACAGTAATAACCTACAAAGTACCAAGACTTACATGGCTGAGGTTGAAAAGTGCAGTTTATATTTTGTCTACTTGGGATTAGCAGCAATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTGCTGAGAATCCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTTGCAAGAAACAACCACTTCTGAAATCATTAATAGCATATCAAAGGACACTTCTCTCATCCAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATCTCGGGGGTTGCATTTGCCACGTACTTCTCTTGGAGGTTGGCATTAGTAGCATTTCCAACGCTGCTTTTGCTCATAATCCCAGGCATGATATACGGGAAATACCTAATCTATTTGTCAAAGTCCACACTGAAAGAATATGGCAAAGCAAACAGCATAGTAGAACAGGCACTTAGCTCCATAAAAACCGTTTATTCATTCACTGCGGAGAAGAGAATCATGGGAAGATATTCAGACATATTGTGTAAAACTTCAAGGCTTGGAATCAAACAAGGCATAGCAAAGGGCATTGCAGTGGGAAGCACAGGTCTATCTTTTGCAATATGGGCTTTTCTTGCTTGGTATGGAAGCCGTTTGGTTATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTTGGAGTGGTACTTCCTGATTTGAAGTACTTCACGGAAGCATCTGTTGCTGCTTCACGAATATTTGACATGATTGATCGAACACCATTAATTGATGGTGAAGACACAAAAGGAGTAGTGTTAGAGAGCATTAGTGGCAGGCTAGACTTTGAGCATGTTAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTTAGAGATTTCAATCTCCAAGTGGAAGCAGGGAAAACGGTTGCTCTGGTTGGTGCAAGCGGAAGTGGTAAGTCCACAGCAATAGCATTAGTGCAAAGGTTTTATGATGCTGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGCCTACAGTTGAAATGGATGAGAGGGAAAATGGGCCTTGTGAGTCAAGAACATGCAATGTTTGGAACTTCCATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACCATGGATGAAATTGTTGCTGCAGCCTCAGCAGCCAATGCTCATAACTTCATAAGGGAACTTCCTGAAGGTTATGAAACCAAGATTGGAGAAAGGGGGGCACTTCTTTCGGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTTATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTTGTTCAGAATGCCCTCGATCAGGCCTCCATGGGGAGAACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACCTCATAGCAGTTGTCAGTGGTGGTTGCATCATTGAAACGGGCACACACAATGAACTCATCACCAAACCAAATGGCCACTATGCAAAACTTGCAAAGTTACAGACACAATTGAGCATTGATGACCAAGATCAAAATCCAGAACTAGGTGCTCTTTCTGCAACAAGAAGCAGTGCAGGCAGACCAAGCACAGCCAGGTCAAGCCCTGCCATATTTCCAAAGTCACCATTGCTTGATGATCAAGCAACTCCATCTCAAGTTTCTCACCCTCCACCTTCTTTCAAAAGGCTTCTTTCTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACCCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCCTTATATGCTTTAACCATTGGTGGTATGATTTCTGCTTTTTTTGCTGAAAGCCATCAAGAAATGAGGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCACTTTCCCTTGCTTCAATTATCCTCAATCTCTTGCAACACTACAATTTTGCTTACATGGGAGCCAAGTTAACAAAAAGGATAAGACTTGGCATGCTGGAGAATATCTTGACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTAGCAGACAGACTCTCTTTACTAGTTCAAACAACTTCTGCTGTCACAATTGCAATGATCATAGGCCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATCCTTTGTTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTGTCAAGGCACAGAATCGAAGTACACAAATTGCAGTGGAGGCAGTTTATAACCACAGAATTGTGACTTCATTTGGGAGCATCACGAAAGTGCTATGGCTATTCGATGAGGCGCAAGAGGCGCCGAGGAAGGAGGCGAGGAAGAAGTCTTGGCTAGCAGGCATAGGAATGGGTTCTGCTCAGTGTCTAACGTTCATGTCATGGGCTTTGGATTTCTGGTTTGGTGGTACTTTGGTGGAAAAAAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGATGCAGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTGGCATCTGTCTTTGAAATTCTTGACCGGAAATCGCTAATTCCCAAGGCTGGAGATAACAATAACGGCATCAAGTTGGAAAAGATGAGTGGAAAAATAGAGTTGAAGAATGTTGATTTTGCATATCCAAGCAGGGTAGGGACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGACTTGTTGGAAAAAGTGGGTGTGGAAAATCAACAGTGATTGCCTTAATTCAAAGATTCTATGATGTTAAGAGAGGTTCAGTTAAAGTGGACGATGTAGACATAAGGGAATTAGACATTCACTGGCACAGGCAGCACACAGCACTTGTTAGCCAAGAACCTGTGATATATTCTGGCAGCATACGTGACAACATTTTGTTTGGGAAACAAGATGCAACAGAGAATGAAGTAGTTGAGGCTGCAAGGGCTGCCAATGCTCAGGAGTTCATATCATCATTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGCAACCCAAAGATACTACTTCTTGATGAGGCAACAAGTGCCCTGGATGTTCAATCAGAACAAGTTGTGCAAGAAGCCCTTGATAGGACTATGGTAGGCAGAACCACTGTTGTTGTGGCACATAGGCTTAACACCATCAAAGAGCTTGATTCAATTGCTTATGTGTCTGAGGGCAAGGTCCTGGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCCAGCCATTAA 3714 0.4303 MGSPKMDESETQKVDMGRKERASIATILRYSDWIDVVLMLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKTYMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDLQETTTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSTLKEYGKANSIVEQALSSIKTVYSFTAEKRIMGRYSDILCKTSRLGIKQGIAKGIAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRTPLIDGEDTKGVVLESISGRLDFEHVKFTYPSRPDMVVLRDFNLQVEAGKTVALVGASGSGKSTAIALVQRFYDADEGVVRVDGVDIKSLQLKWMRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAASAANAHNFIRELPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGCIIETGTHNELITKPNGHYAKLAKLQTQLSIDDQDQNPELGALSATRSSAGRPSTARSSPAIFPKSPLLDDQATPSQVSHPPPSFKRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHQEMRHRIRTYSLIFCSLSLASIILNLLQHYNFAYMGAKLTKRIRLGMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNRSTQIAVEAVYNHRIVTSFGSITKVLWLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWFGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNNNGIKLEKMSGKIELKNVDFAYPSRVGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVKRGSVKVDDVDIRELDIHWHRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAARAANAQEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTVVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLASH* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0630 1237 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Gso16g0630 1237 Pfam ABC transporter transmembrane region 40 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0630 1237 Pfam ABC transporter transmembrane region 678 947 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0630 1237 SUPERFAMILY ABC transporter transmembrane region 660 978 IPR036640 GO:0005524|GO:0016021
Gso16g0630 1237 CDD ABC_MTABC3_MDL1_MDL2 1001 1235 - -
Gso16g0630 1237 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 23 1236 - -
Gso16g0630 1237 Gene3D - 355 604 IPR027417 -
Gso16g0630 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Gso16g0630 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0630 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Gso16g0630 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 338 - -
Gso16g0630 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0630 1237 Gene3D ABC transporter type 1, transmembrane domain 644 986 IPR036640 GO:0005524|GO:0016021
Gso16g0630 1237 Gene3D ABC transporter type 1, transmembrane domain 27 611 IPR036640 GO:0005524|GO:0016021
Gso16g0630 1237 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1236 IPR039421 -
Gso16g0630 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Gso16g0630 1237 SMART AAA_5 392 584 IPR003593 -
Gso16g0630 1237 SMART AAA_5 1028 1220 IPR003593 -
Gso16g0630 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1235 IPR027417 -
Gso16g0630 1237 MobiDBLite consensus disorder prediction 613 641 - -
Gso16g0630 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Gso16g0630 1237 Gene3D - 991 1237 IPR027417 -
Gso16g0630 1237 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Gso16g0630 1237 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Gso16g0630 1237 MobiDBLite consensus disorder prediction 613 638 - -
Gso16g0630 1237 Pfam ABC transporter 1022 1168 IPR003439 GO:0005524
Gso16g0630 1237 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Gso16g0630 1237 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0630 Gso-Chr16 8044024 8054099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0630 40 603 Calmodulin-binding Proteins AT2G36910 35.826 8.01e-99 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0630 K05658 - gmx:100819207 2339.3