Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0620 ATGGCAGCAGTGTCAGGAGGAGGGAGTGAGATATGGAAGGCCCACACGGCAATGGCCATGGTGCAGTTATTCAACGGAGGTTATCACGTCATCACCAAAGTTGCTCTCAACGTTGGGGTCAACCAAATCGTCTTCTGCGTCTTCCGCGACCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTACATCCGCGAAAAGCGTATGCGGCCACCCTTAACCAAACGCCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGGGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCTGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGGAACTTTTTCCTGTGTTTTAGGTGCTGTACTAATGGTTTTATATCGTGGTCCGGCATTGATAGGGTATTCAGAAACTGACTTTGTATCACACAGTGAGATAAGTGCCAAAGGTCAACCGGAGCCTTCTGGATGGTTAATTAGTGGTTTACAGGATCTTGGATTAGACCATTTTCATCTCGGGGTTTTGTGCTTCATAGGGAACTGCATGTGTATGGCTGCTTTTCTATCCATTCAGGCTCCATTATTAAAAAAGTATCCTGCAAACCTATCTGTCACAGCATATTCATACTTCTTTGGAGCTGTATTGATGGTAACTACATCATTCTTTGCAACTAATGAATCAACTGACTGGAGATTGACACAATCTGAAACAATAGCCGTTATTTATGCTGGATTTATTGCATCTGCCCTTAATTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCCATGGTTGCTCTTTATAATCCACTTCAACCTGGAGCTTCTGCTCTCCTATCCAGAATTTTTCTTGGAAGTCCAATTTACATGGGAAGCATCATAGGAGGATCTTTGATCATTATTGGTTTGTATGCGGTTACTTGGGCGTCATATAGAGAAAGACATGCAGCTGCTGGAGTTGTTTCTCATGGCTCTTGGGTCTCGGAATCACTAGTTCATGACAAGAGTTCTTTTAGGGTTAACATTTTCTCAGGACCCCCCAGCCTGTCCACAAAGCCTTCGGATTAA 1164 0.4407 MAAVSGGGSEIWKAHTAMAMVQLFNGGYHVITKVALNVGVNQIVFCVFRDLIALAILAPLAYIREKRMRPPLTKRLLLSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPATPVFTFLLAVMMGTERVNLLRYDGLAKVGGTFSCVLGAVLMVLYRGPALIGYSETDFVSHSEISAKGQPEPSGWLISGLQDLGLDHFHLGVLCFIGNCMCMAAFLSIQAPLLKKYPANLSVTAYSYFFGAVLMVTTSFFATNESTDWRLTQSETIAVIYAGFIASALNYGLITWCNKILGPAMVALYNPLQPGASALLSRIFLGSPIYMGSIIGGSLIIIGLYAVTWASYRERHAAAGVVSHGSWVSESLVHDKSSFRVNIFSGPPSLSTKPSD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0620 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 139 - -
Gso16g0620 387 PANTHER WAT1-RELATED PROTEIN 12 373 IPR030184 GO:0016021|GO:0022857
Gso16g0620 387 Pfam EamA-like transporter family 202 339 IPR000620 GO:0016020|GO:0016021
Gso16g0620 387 Pfam EamA-like transporter family 19 135 IPR000620 GO:0016020|GO:0016021
Gso16g0620 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 258 345 - -
Gso16g0620 387 PANTHER WAT1-RELATED PROTEIN 12 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0620 Gso-Chr16 7876749 7887883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0620 10 273 Nodulin-like Gene Family AT3G45870 71.591 2.87e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0620 - - gmx:100781969 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0759 11 6834906 6840918 Gso16g0620 16 7876749 7887883 PCT
Gso16g0620 16 7876749 7887883 Gso11g0759 11 6834906 6840918 PCT