Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0619 ATGCCAGAAAACTGCATAGCACCCAAACCAGAACACAATAACAACAACACTACTCACCCTGAGGAAGGACCACCTGAGATGACTGAGACTGTCCTTCCCATAAAAACAAATGAGCAATCTTTTCCAAAACTAGCTATGTTCCCCATAACTTTGAAGTTTGAGGAATTGGTGTACAATGTTAAAATAGAGCATAAGGGTGGTCTATGTTGGGGTAGCACAAGGAGTTGCAAAGAGAAGACCATACTTAAAGGAGTCACAGGCATGGTTTCTCCAGGAGAAATAATGGCCATGTTGGGGCCATCAGGAAGTGGTAAAACCACACTTCTCACAGCACTTGGAGGAAGGCTCAGTGGCAAACTATCAGGAAAAGTCACTTACAATAACCAGCCTTTTTCAGGTGCCATGAAAAGAAGAACAGGCTTTGTGGCGCAGGATGATGTGCTATACCCTCATCTCACAGTCTTTGAAACCCTTCTTTTCACTGCACTTCTGAGGCTCCCCAACTCCTTGACAAAGGAAGAGAAAGTGCACCATGTGGAGCATGTGATCAGTGAGCTAGGGCTGAGTAGGTGCAGGGGTAGCATGATTGGAGGCCCTTTCTTCAGAGGGATTTCAGGAGGGGAGAGAAAGAGGGTCAGCATAGGCCAGGAAATGCTCATCAATCCAAGCCTCTTGCTGCTTGATGAGCCTACCTCAGGGTTGGACTCTACAACTGCTCAAAGGATCATAACGACAATCAAAGGCTTGGCTTGTGGGGGAAGAACTGTTGTCACCACCATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAAGTGGTCTTGCTCTCTGAAGGATGCCCCATCTATTATGGCCCTGCTTCATCTGCAATGGACTACTTTTCTTCTGTTGGTTTTTCCACATCCATGATTGTCAATCCTGCTGATTTAATGCTTGATCTTGCCAATGGAATTGCTCCAGACTCCTCCAAGCTTCCAACTGAACAAAGTGAGAGCCAGGAGGTAGAAAAGAAGTTGGTGAGGGAAGCTTTAGTCTCTGCTTATGATAAGAACATAGCTACTAGGCTGAAAGACGAACTATGCAGCTTGGAAGTGAATAACTTCAAAGCCATTAAGGATGCTTCCACAAATGCAGGAAATCACATAAAACCAGAGCAATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTATTGCAAAGGGGTCTGAGGGAGAGAAGGTTTGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTCGCTTTCCTTGGTGGACTCCTGTGGTGGCACACTCCAGAATCACACATTGGAGATCGGATAGCCCTGCTCTTCTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTATAATGCTGTTTTCACATTTCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCGTCCGGAATGTACCGTCTTTCTTCCTACTTTCTAGCCAGAACAGTAGGAGACTTGCCAATAGAACTTGCACTTCCAACTGCATTTGTCATCATAATCTATTGGATGGGAGGGCTCAAGCCTCATCCAGTGACCTTTCTCCTTTCCCTCCTTGTGGTCCTCTACAGTGTCCTTGTCTCTCAAAGTCTTGGCTTAGCATTTGGTGCCATTTTGATGGAGGTCAAACAGGCCACAACTTTGGCTTCTGTGACAACCCTTGTGTTCCTCATTGCTGGAGGCTACTATATTCAACAAATTCCTCCCTTCATAGAGTGGCTCAAGTACTTGAGCTATAGCTACTATTGTTACAAGCTTCTTGTTGGTGTGCAGTACAATGATGATGATCATTATGAGTGCTCAAAAGGGGTCTTGTGCAAAGTTGGAGAGTTTCCTCCAATCAAATCAGTGGGTTTGAATCACTTGTGGGTTGATGTGGCTATTATGGCCTTGATGTTGGTAGGTTACCGACTAATTGCATATTTAGCACTACAGAGAATGAGGTAG 1971 0.451 MPENCIAPKPEHNNNNTTHPEEGPPEMTETVLPIKTNEQSFPKLAMFPITLKFEELVYNVKIEHKGGLCWGSTRSCKEKTILKGVTGMVSPGEIMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNNQPFSGAMKRRTGFVAQDDVLYPHLTVFETLLFTALLRLPNSLTKEEKVHHVEHVISELGLSRCRGSMIGGPFFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIITTIKGLACGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGPASSAMDYFSSVGFSTSMIVNPADLMLDLANGIAPDSSKLPTEQSESQEVEKKLVREALVSAYDKNIATRLKDELCSLEVNNFKAIKDASTNAGNHIKPEQWCTSWWHQFKVLLQRGLRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVIIIYWMGGLKPHPVTFLLSLLVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLVGVQYNDDDHYECSKGVLCKVGEFPPIKSVGLNHLWVDVAIMALMLVGYRLIAYLALQRMR* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0619 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 304 IPR003439 GO:0005524
Gso16g0619 656 MobiDBLite consensus disorder prediction 9 23 - -
Gso16g0619 656 Gene3D - 71 298 IPR027417 -
Gso16g0619 656 Pfam ABC transporter 82 232 IPR003439 GO:0005524
Gso16g0619 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 297 IPR027417 -
Gso16g0619 656 SMART AAA_5 91 281 IPR003593 -
Gso16g0619 656 MobiDBLite consensus disorder prediction 1 27 - -
Gso16g0619 656 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 30 654 - -
Gso16g0619 656 ProSitePatterns ABC transporters family signature. 204 218 IPR017871 GO:0005524
Gso16g0619 656 CDD ABCG_EPDR 48 286 - -
Gso16g0619 656 Pfam ABC-2 type transporter 395 600 IPR013525 GO:0016020|GO:0140359
Gso16g0619 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0619 Gso-Chr16 7852335 7856164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0619 81 280 Calmodulin-binding Proteins AT2G36910 28.365 7.30e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0619 K05681 - gmx:100781419 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1316 1 49685494 49688700 Gso16g0619 16 7852335 7856164 PCT
Gso11g0762 11 6877073 6880408 Gso16g0619 16 7852335 7856164 PCT
Gso16g0619 16 7852335 7856164 Gso1g1316 1 49685494 49688700 PCT
Gso16g0619 16 7852335 7856164 Gso11g0762 11 6877073 6880408 PCT