Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0608 ATGGGTTCCAATGGTAGCAAAGCCACTTCTTCGTATTTAAGTAGTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTGTTGTCTTGGAACAACTTCTGGTTCTCAAGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGCTACATATGCTGATGGCAATGGCACAGACTCGGATGAGGTGAAAGCGGAGTCATTTAGAAAGGTTAAACCTGGGGCAATGACTTGTATGCCTTCTAACATAGGCCTTGATGGATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGGAAGCAGCTCTATCCATACTTCTTCAACTCATTCCTTGAACCCTACAAGTCATTGCCTTTCTCGGTTTAGCCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCAAGTCCTCGTCCTGTTTCTTCTGCCAATCTCTCAATATTTGACAATGAAGATGAGCATAATCTCCATCCTGGATCTCCTGGATGTTTGATTAACAGAAGTGTAACACAACAACGTAGTAATTTGCTTCCTGCATCTTTTTTCAATCAAATACATGCACAATGTCATGAAGACGCTTCTAATAATTCAAGGTCAAATGTCCCGACATCAGGCATACTTCGAAACTTGCAGAGCAATTCCACAGATGGAGTATGTACAAGAGAAGGGCCAGATGTGAACTTACTTTCTCCAAGAAGTCAGACCGCGACAGAAAATGTTGACAATGACACTACACATATTGATCAACGAAATGGTGCTCGAGAACCAGTTGAACGGAATTTTCATTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTCCGTCGATCAACATTATCTGACCTCACCTTTTTCCCTTTGCAACAAGAGACAGAGCTGAGAGATGCTAGCCTGCCTAGCCAGGATATGGACAGGCAAGCAGTGGAGGGAAATTCAAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACAAATAGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCATCCAAGATTATGAGGGTGAGACTTCAGGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGATTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCGTGCATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATCAATAATCGTAACACTAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCCTATTTGAGGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCGCAATGTTATATATGCCTTGTTGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGAAGGGACATATGCATATCCGACTCAACACCAACAGAGAACTCGAGTTGCTAG 1737 0.4243 MGSNGSKATSSYLSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSQDSDNEDQVCDQNKVNGSDATYADGNGTDSDEVKAESFRKVKPGAMTCMPSNIGLDGWGETSIPNTSSRTGSSSIHTSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSSPRPVSSANLSIFDNEDEHNLHPGSPGCLINRSVTQQRSNLLPASFFNQIHAQCHEDASNNSRSNVPTSGILRNLQSNSTDGVCTREGPDVNLLSPRSQTATENVDNDTTHIDQRNGAREPVERNFHFSRTLSVGRLRDRVLRRSTLSDLTFFPLQQETELRDASLPSQDMDRQAVEGNSRVSPSDHSTINSSTNRYPPSSMSNSMFSIQDYEGETSGLREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHHQSVVLSSRPSVSSIGSVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRRDICISDSTPTENSSC* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0608 578 SUPERFAMILY RING/U-box 498 569 - -
Gso16g0608 578 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 577 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 251 266 - -
Gso16g0608 578 ProSiteProfiles Zinc finger RING-type profile. 520 562 IPR001841 -
Gso16g0608 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 567 IPR013083 -
Gso16g0608 578 MobiDBLite consensus disorder prediction 103 131 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 331 364 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 104 131 - -
Gso16g0608 578 SMART ring_2 520 561 IPR001841 -
Gso16g0608 578 MobiDBLite consensus disorder prediction 42 80 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 1 26 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 1 27 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 42 71 - -
Gso16g0608 578 CDD RING-H2_PA-TM-RING 519 562 - -
Gso16g0608 578 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 577 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 322 364 - -
Gso16g0608 578 MobiDBLite consensus disorder prediction 247 277 - -
Gso16g0608 578 Pfam Ring finger domain 519 562 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0608 Gso-Chr16 7624401 7629864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0608 245 569 C3H Transcription Factor Family AT5G45290 60.597 2.18e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0608 - - gmx:100812272 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1293 1 49371854 49377298 Gso16g0608 16 7624401 7629864 PCT
Gso9g1792 9 42377277 42382607 Gso16g0608 16 7624401 7629864 PCT
Gso16g0608 16 7624401 7629864 Gso1g1293 1 49371854 49377298 PCT
Gso16g0608 16 7624401 7629864 Gso9g1792 9 42377277 42382607 PCT