Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0602 ATGGACAATGGTGATGAGCCTCTGTTGCATGGCAAAATCGGTACCATACTAATAGCCATGGGTTCAGCCAGTTTCCTGGTCACAATATTCCATCTCGTAATCCTTTGCCGCACCCACCGCCAGGTGGCGAACAACCAAAATTCAGAACAAGAAGAAGCCCTAGGGCGGCGCACGGGAGAGAACGCTCGGGTGCCGCACCTGATTCCAGCCCAGAAGTACGAAAAGAAGAAGAAAAGTGATGGTAACGAGGGTGATGAAACATGTGCTGTGTGCTTGGAAGAGTTCGAAGAGGGTGAAGAGTTGAGGAGGCTTCCGGAATGCATGCACTTTTTCCACGTGGCGTGCATAGACGCGTGGCTCTACTCCCATTCCAACTGTCCCGTTTGCCGGGTCCACGCCACGCCCTCGCCGGCGTTGAATGCGCAACACACCATAGATATCATGCAAATAGCTCGCGTTCAAAATGGCTCTGCACGACTTGAAATAATATTGACCTGA 498 0.5181 MDNGDEPLLHGKIGTILIAMGSASFLVTIFHLVILCRTHRQVANNQNSEQEEALGRRTGENARVPHLIPAQKYEKKKKSDGNEGDETCAVCLEEFEEGEELRRLPECMHFFHVACIDAWLYSHSNCPVCRVHATPSPALNAQHTIDIMQIARVQNGSARLEIILT* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0602 165 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 144 - -
Gso16g0602 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 135 IPR013083 -
Gso16g0602 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 144 IPR044675 -
Gso16g0602 165 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Gso16g0602 165 SUPERFAMILY RING/U-box 79 137 - -
Gso16g0602 165 Pfam Ring finger domain 87 130 IPR001841 -
Gso16g0602 165 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0602 Gso-Chr16 7566616 7567325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0602 20 134 C3H Transcription Factor Family AT5G17600 39.516 1.32e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0602 - - gmx:100809606 332.413