Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0601 ATGGAGAAAACAAGGCCCTCAGACCAAGTTGTTCTGTTCTTGGACCAGCATAACCCTAAACCACCCTCTATAGAGTCCGAAAACCATCAAAATAAACCTAAACACCCCTTAAAGGTCAGAACTCTTAACCGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCTAGAATACAACTATAATGTCCCCCGCAACAAAGTTGCAATCTCTGAAGAAATTAGTGACGTTATTCAACCCACCTATAAGCTCTCGTCCAACGATGACGACAAAGAGGACGACGAAGATGATTGCGAATGGGATGAGGACGAGACGGAGGAGGATGGTTCGGAGCATGGCCCAAAGTTGCACCAAAAGAGGAAGTGCAAAATCAAGTGGAGGCTCATGATGGAGTGGATTTTGTTCCTAAACATATTGACATGCTTGGTATGTTCTTTGACCATATCTTCCATAACCAACATGCACCTTTTGGGATTGGAGATTTGGAAGTGGTGTTTGATGGCAATGGTCACATTCAGTGGCCGTTTGGTTTCGGGGTGGCTGGTAGGTCTAACGGTGTTCATCATCGAGCGAAACTTCATGCTCCGAGAGAAGGTACTGTACTTCATCTACGGGCTCCGAAAGAGCATAAGAAACTGCATGTGGCTAGGCCTGGTGCTACTCTCCTACTGGAGCGTGGTGTTCGACGACGTGCAAAAGAAGAACCACAAGTTCCTCAACAAGGTCTTCCAAGCCCTAGTAGCAGTCTTAGTTGGGGCCACCATCTGGCTCCTGAAGATCGTGCTGGTGAAGATGCTGGCGTCCTCGTTTCACGTCACCACCTACTTCGACCGAATGAAGGAGAGCGTCTTCCATCACTACATCTTGGAGACCCTGTCGGATCCACCGATGATGGACGATGTCGCCGAACAGCAGCACCATCTCACCAGGTGGAACAACGCCAGGAACTTGAACAAGTCCAAGAAGTTTGGGTCAAGGAGGATTGATATGGAGAAGCTGAGGAAGCTCAGCATGGAGAGCACCGCTTCGGCGTGGAGCGTGAAGAGGCTTGTGAACTACGTTAGGTCTTCTGGGTTGTCCACTATTTCAAGGACTGTCGATGATTTTGGCAACGCCGAGTCTGAGATTAATAGTGAGTGGGAAGCTAGGAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCCCTCTTTGAAGGCGCTCTCGAAACGGGACATATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCTCTAGCACAATCATTGAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGCGCAATCGTTAGTGTGATAATAATCATTGTGATGCTCTTGGTGATGGAGGTGGCTACGCTCAAGATAATATTATTTTGTATTACACAAACTGTTTTGATAGGTGTTGCTTTCCAAGGTACCTGCAAGACTGTATTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGCGTCATTGATGGAGTTCATATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAACGCAGTTTTACTCTCTAAGCCTATAAGCAATTTCTATAGGAGTCCAGAGATGTGTGATTCAATTGATTTCACCATTGATGTATCAACTTCTATGGAGACCATCCTTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACAGCATGATAGCAAAAGGAATTGAGAATATGGACAAGCTAAAGTTGTGCTTATCTGTGCAACATACCATCAACCATCAGAACTACGGTGAACGAAACGTCAGGATAACAGAGCTTCTCTTGGAACTGAAGAAGATCTTTGAGATTCATGGTATTAAGTACCATCTTCTTCCTCAAGAGATCCAGATAACCCATATGAATATTGAACATGGCAAAGTTTTGTTTCAATCATGA 2082 0.4438 MEKTRPSDQVVLFLDQHNPKPPSIESENHQNKPKHPLKVRTLNRLSFSKPKSRILEYNYNVPRNKVAISEEISDVIQPTYKLSSNDDDKEDDEDDCEWDEDETEEDGSEHGPKLHQKRKCKIKWRLMMEWILFLNILTCLVCSLTISSITNMHLLGLEIWKWCLMAMVTFSGRLVSGWLVGLTVFIIERNFMLREKVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGATIWLLKIVLVKMLASSFHVTTYFDRMKESVFHHYILETLSDPPMMDDVAEQQHHLTRWNNARNLNKSKKFGSRRIDMEKLRKLSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGHISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMCDSIDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKHSMIAKGIENMDKLKLCLSVQHTINHQNYGERNVRITELLLELKKIFEIHGIKYHLLPQEIQITHMNIEHGKVLFQS* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0601 693 SUPERFAMILY Sm-like ribonucleoproteins 514 572 IPR010920 -
Gso16g0601 693 MobiDBLite consensus disorder prediction 79 113 - -
Gso16g0601 693 PIRSF Memb_At2g17000 7 691 IPR016688 -
Gso16g0601 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 691 IPR016688 -
Gso16g0601 693 Gene3D - 523 572 IPR023408 -
Gso16g0601 693 MobiDBLite consensus disorder prediction 87 106 - -
Gso16g0601 693 MobiDBLite consensus disorder prediction 1 38 - -
Gso16g0601 693 Pfam Mechanosensitive ion channel 464 669 IPR006685 GO:0016020|GO:0055085
Gso16g0601 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0601 Gso-Chr16 7506933 7520894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0601 6 683 Mechanosensitive Ion Channel Family AT5G12080 42.632 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0601 K22048 - gmx:100808521 1322.38