Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0598 ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGACCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGGCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGAAGGGCTCACAAGGTCAAGGCTGGTGATTCTACCCCTGAAGAGCTGGCTAATGCCACTCAAGTTCAGGGTTCATTCTTGCCCATTGTGAGGGAGAAGCCAACTGTTGACCTTATTAAGGTAACAGATGAAATGAAGGCATTCAAAGCTTATTATAAGCTTCGTCTTGAGCGCACCAACAAACGCCACTATGGTGCGCGCCTAAAGAAGGCCGCAGAAGCAGAGAAAGAGGACAAAAAATGA 624 0.4663 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLGPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAHKVKAGDSTPEELANATQVQGSFLPIVREKPTVDLIKVTDEMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0598 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Gso16g0598 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Gso16g0598 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Gso16g0598 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Gso16g0598 207 Gene3D - 167 207 - -
Gso16g0598 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0598 Gso-Chr16 7434028 7436675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0598 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.864 8.45e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0598 K02873 - gmx:100499935 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1771 9 42145653 42148160 Gso16g0598 16 7434028 7436675 PCT
Gso16g0598 16 7434028 7436675 Gso9g1771 9 42145653 42148160 PCT