Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0593 ATGGCTGCAATATCAATACCTTCTCACATGAAAGCTTGGACATACTCTGAGTATGGAAAATCCAAGGAAGTTCTCAAGTTTAATCAGAGTGTGGCTTTGCCTGAGGTGAAGGAAGACCAGGTCCTCATCAAGGTCGCTGCTGCTTCCCTTAACCCCATTGATCATAAGAGAATGGAAGGCTATTTCAAGAACAGCGACTCCCCTTTACCTACTGCTCCGGGTTATGATGTTGCTGGAGTGGTGGTTAAAGTGGGAAGTGAAGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGTGAAAGCTTTGGAATATCCAAAGGTGATTGGTTCTTTGGCTGAGTACACTGCTGCAGAAGAGAGGCTATTGGCTCACAAGCCACAGAATCTGAGCTTTGCTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACTGCTTATGAAGGCCTTGAACGAACCGGGTTTTCTGCTGGGAAATCTATCCTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCCAAGCATGTTTATGGAGCATCCAAGGTAGCAGCTACTGCTAGCACTAGGAAACTGGAACTATTAAGGAATTTGGGAGCTGACTGGCCTATTGATTATACAAAGGAGAATTTTGAAGACCTGTCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACAGGCATTCAAGGTTTTGAAAGAAGGAGGAAAAGTTGTGACAATAGTACCACCTGGATTTCATCCAGCTATCCTTTTCATACTCTCTACTGATGGGGCGATCTTAGAGAAACTAAACCCCTATTTTGAGAGTGGTAAGCTGAAGCCAATACTTGACCCGAAGAGCCCGTTTCCATTTTCTCAGACTGTTGAAGCGTTTGCCCATCTGGAAACAAACAGAGCAACTGGAAAAATAGTTGTCTATCCCATTCCATGA 960 0.4406 MAAISIPSHMKAWTYSEYGKSKEVLKFNQSVALPEVKEDQVLIKVAAASLNPIDHKRMEGYFKNSDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINVKALEYPKVIGSLAEYTAAEERLLAHKPQNLSFAEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTRKLELLRNLGADWPIDYTKENFEDLSEKFDVVYDTVGQTEQAFKVLKEGGKVVTIVPPGFHPAILFILSTDGAILEKLNPYFESGKLKPILDPKSPFPFSQTVEAFAHLETNRATGKIVVYPIP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0593 319 Pfam Alcohol dehydrogenase GroES-like domain 39 104 IPR013154 -
Gso16g0593 319 CDD MDR_like_2 10 315 - -
Gso16g0593 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Gso16g0593 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 285 IPR036291 -
Gso16g0593 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 319 IPR044626 GO:0016628
Gso16g0593 319 Gene3D - 152 266 - -
Gso16g0593 319 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 3 319 - -
Gso16g0593 319 Gene3D - 17 315 - -
Gso16g0593 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
Gso16g0593 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Gso16g0593 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0593 Gso-Chr16 7367327 7370524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0593 70 253 Monolignol Biosynthesis Gene Families AT4G37980 25.701 1.27e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0593 K18980 - gmx:100817947 613.609