Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0589 ATGGATAAAAAACAACTGTGCAACACGTCTCAAGATCCTGAAGTGAGAAAAGGACCTTGGACGATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGGGAAGGTGTTTGGAATTCTTTGGCCAAAGCTGCTGGTCTCAAACGTACCGGAAAGAGTTGCCGGCTAAGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCTGGTAGGACAGATAATGAGATCAAGAACTATTGGAGGACCAGGATCCAGAAGCACATCAAGCAAGCTGAGAACTTTCAGCAACAAATCAGCAATAACTCTGAGATAAATGATCACCAAGCTAGCACTAGCCATGTTTCTACCATGGCTGAACCCATGGAGACCTATTCTCCACCCTTTTATCAAGGAATGTTAGAGCCATTTTCTTCAATTCAGTTCCCCACAATTAATCCTGATCAATCCAGTTGTTGTACCAATGACAACAACAACAGCATTAACTATTGGAGCATGGAGGATATCTGGTCAATGCAGTTACTGAACGGGGATTAA 627 0.4322 MDKKQLCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQISNNSEINDHQASTSHVSTMAEPMETYSPPFYQGMLEPFSSIQFPTINPDQSSCCTNDNNNSINYWSMEDIWSMQLLNGD* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0589 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gso16g0589 208 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso16g0589 208 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gso16g0589 208 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 5 205 - -
Gso16g0589 208 CDD SANT 74 113 IPR001005 -
Gso16g0589 208 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso16g0589 208 Gene3D - 74 145 - -
Gso16g0589 208 CDD SANT 19 64 IPR001005 -
Gso16g0589 208 SMART sant 69 117 IPR001005 -
Gso16g0589 208 SMART sant 16 66 IPR001005 -
Gso16g0589 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso16g0589 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 205 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso16g0589 208 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso16g0589 208 Gene3D - 17 69 - -
Gso16g0589 208 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0589 Gso-Chr16 7297463 7301693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0589 9 208 MYB Transcription Factor Family AT3G01530 57.488 4.01e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0589 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0589 K09422 - gmx:778046 443.736