Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0588 ATGGAGTTTGATCCAATCTTCCCAGCAGAAAAAATTCACTTCCTTTCTGGTATTTTCTCTGGGATCAAATCAGAGATCCCTGTTATCCCCATGTCACAAGAGAACAACAACAACACCATCTGCATGCACCAAAACAATTTCAACAACCATTTTCAGCACCTTCCCCTGAATGAACCAAACCATGACCATAACCACCACCATCCTACTATTACAAAAATTTTCACAGAGGGTTCTAATTCCTCCATCCTCACCCCATTGTTCTGTTTGTCCTCTTCTTCAGGTTACTCATACCGTAATGAGTCCCTCAGAGGAGGCTTTGCCAACAACAACAACAACTACAAACACTCCATCATGCCTTATGCACCAAACAGCACCCAAAATGAACCCATGCATGGCCCCAACAGAGCAATCTGGGATTTTTCCCAGAAAATTCCCCTTCAGTACTCTGGTGCAGGTGCAAGTGCAACTTCATCACAGCCTCATCAGGTGCAAAGGAGGAGTAATGGCAAAATTCATCAGCACAGGAATATGGGCAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGGGTGCTCGTCCAATTGGTGGAACGCTTCGGGTTCAAAAAATGGTCTCACATCGCAAGGTTGCTGAATGGAAGGGTTGGGAAACAGTGCAGGGAAAGATGGCACAACCATCTCAGGCCAAACATTAGGAAGGAGTCATGGAACGAAGAGGAGGACAGAATCCTGATCGAAGCTCACAAGGAGGTTGGAAACAGGTGGGCCGAAATCGCAAGGAGAATGCCTGGTAGGACGGAGAACACCATCAAGAACCACTGGAACGCAACAAAGCGTCGCTTGAACGCCAAGAGGCTGAGGAACAAGCGCAGGGGTTTGAAGGGACCAACGCTTTTGGAGAGCTACATAAGGCAAGTCACTGCAAATGAAGAAACCCAAAAGGAGATGATCAAGAATTCCATGAGCAACATGAACCTGAAGGGCGAGAGTAGTAGCAACACCACCACCACTAATACCAATACCAATACCAATACCAGATATCCGCATCTCTTTCGGGTTTGGTATGAGAGCTCAGAGGGTGGGTTCAGTTCTGAGGAGGATGAGGCTGGGTGGAGTGTGCAGCAGCCACATGGTGTTGGTGGCGGCTATGTGCCTATGATGCTAAATGCTACTGTGGAAGATGGCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAAGAAGGAAATGGATCTCATGGAGATGATCATTAGAAAAGCTTAA 1281 0.4723 MEFDPIFPAEKIHFLSGIFSGIKSEIPVIPMSQENNNNTICMHQNNFNNHFQHLPLNEPNHDHNHHHPTITKIFTEGSNSSILTPLFCLSSSSGYSYRNESLRGGFANNNNNYKHSIMPYAPNSTQNEPMHGPNRAIWDFSQKIPLQYSGAGASATSSQPHQVQRRSNGKIHQHRNMGNIIKGQWSAEEDRVLVQLVERFGFKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWNEEEDRILIEAHKEVGNRWAEIARRMPGRTENTIKNHWNATKRRLNAKRLRNKRRGLKGPTLLESYIRQVTANEETQKEMIKNSMSNMNLKGESSSNTTTTNTNTNTNTRYPHLFRVWYESSEGGFSSEEDEAGWSVQQPHGVGGGYVPMMLNATVEDGTMGYDVAMEMAPEVQMKKEMDLMEMIIRKA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0588 426 PANTHER MYB DOMAIN PROTEIN 100-RELATED 42 345 - -
Gso16g0588 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 232 IPR017930 -
Gso16g0588 426 MobiDBLite consensus disorder prediction 150 170 - -
Gso16g0588 426 MobiDBLite consensus disorder prediction 325 345 - -
Gso16g0588 426 PANTHER MYB PROTEIN-RELATED 42 345 - -
Gso16g0588 426 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Gso16g0588 426 Pfam Myb-like DNA-binding domain 185 242 - -
Gso16g0588 426 ProSiteProfiles Myb-like domain profile. 177 228 IPR001005 -
Gso16g0588 426 Gene3D - 181 233 - -
Gso16g0588 426 CDD SANT 236 279 IPR001005 -
Gso16g0588 426 SMART sant 181 230 IPR001005 -
Gso16g0588 426 SMART sant 233 281 IPR001005 -
Gso16g0588 426 MobiDBLite consensus disorder prediction 150 166 - -
Gso16g0588 426 SUPERFAMILY Homeodomain-like 179 275 IPR009057 -
Gso16g0588 426 Gene3D - 235 296 - -
Gso16g0588 426 CDD SANT 185 228 IPR001005 -
Gso16g0588 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 283 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0588 Gso-Chr16 7269515 7272948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0588 178 307 MYB Transcription Factor Family AT4G18770 66.923 5.56e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0588 Myb_DNA-bind_6 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0588 K09422 - gmx:100805329 809.29