Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0585 ATGGATTCGTATTCTTTGAAGTCTGTGTTCGACTTGCCTGCACCATTTCGCTCATGTTTTAGTTTCAGATATTTTAATTCACTTCAGAGTGAATGCTTTCCTATCTGTTTCCACTCTGATGTAAACATGGTCATCTCTGCACCAACTGGGAGTGGTAAAACTGTACTCTTTGAACTTTGCATTTTGAGGCTACTCTCCAGTTTCATCACCGCAGAGGAAAGATTCTTACATTTAAAGGGATCTCTTAAAACAATCTATATAGCCCCATCTAAGGCTTTAGTACAGGAGAAGCTCCGTGATTGGAATAAGAAGTTTGGGCCGTGGGGAATAAATTGCCTGGAGTTAACAGGTGACAATGAATCTTACACTCCAAGGAATATACTAGAAGCTGATATTATTCTCACAACTCCTGAGAAATTTGATGCAGTGTCACGATATGGTATAGAAAGTGGTGGCTTGAGCTTTTTTAGTGACATATCACTTTTACTAATTGATGAAGTTCATCTATTGAATGATCCACGTGGAGCTGCTCTGGAAGCAATTGTTAGTAGAATTAAAATCGTTTCTGGCAATCCGAAAATGAAATCAAATCCTCTGGCTCAGGTCCGCTTCCTTGCTGTGTCTGCTACAATTCCAAATATTGAGGATCTAGCGAAGTGGCTTGAGGTTCCTGATCAAGGGATCAAAAGGTTTGGAGAAGAAATGAGGCCGGTAAAGCTGACAACCAAGGTTTTTGGCTATGCCCCAGCCAAGAATGACTTCCTCTTTGAGAAGCGCCTTCAAAATTATATTTTCGATATTCTCATGCAATACTCAAGAGGGAAATCTGCTCTTGTATTTTGTTCAACAAGAAAGGGAGCACAAGAAGCTGCTCAGCGACTCTCTCAAATAGTAATGACTTTTGGTCAATCAAATCCATTCATTAAGAACAGAGAACAACAAGATCGGCTGAGAGAGGCTTCTTTATCTTGCAGTGACAAGCAAATGCAGTCATATATTCTTTACGGTGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTTAACAAGGAAAAAGGTCTCTATATGGAATATGACCGCTCTACTATATTGCAGATGTGTGGAAGGGCAGGCCGACCACCATTTGATGATACAGGCATGGTTATAATCATGACAAGGAGAGAAACGGTTCATTTGTATGAGAATCTCTTAAATGGGTGTGAAGTGGTGGAATCACAATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTGTACGTTAGAATGAAAAAGAACCCTATGAACTATGCAATTAAGAAAGGAATTTCTGGCGATCGTTTAGAGAAGCACGTGCAAGATATTTGTGTGCGTAAAGTTAACGAGTTATCACAGAATGATATGGTCTGGGTTGATGAAGATGGTTTCCTCTTGCGACCATTAGATCCTGGAAGGTTAATGACAAAGTACTATTTGAGATTTGACACAATGAAACAGATAATGCGGACTCCTGAAAATTGCAGTTTGGAAGATGCACTTCATGTTGTGTGTTGTGCAGAAGAAATTGCATGGATACAGCTCAGACGCAATGAGAAGAAACTCTTAAATGAGATCAATGCTGATAAAGATGGTCGGCTTCGCTTTCACATTCTTGGAGATAAAAGGAAAAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGGCACTGCATTCAATGGGAGTTAGATCGTTTGAGGAACTTGCTGATGCTGATCCGAGGAGAATAGAGCTAGTGACTGGTCGAAAATACCCATTTGGTAACCATATTAAAGATTCTCTACTGTCTCTACCTCCAAAAGTTGATGTGACGCTTGCAGAGATTGAAAGCCATATACAAGGAAATTCCAAGCTAGTAGTAACATTGGCTAGGATATCACAGTCAGGCCAGTCAGTTAAACGACATTATGCTGATATGATCGTTGGTTCGGAGGAGGACAACACTATTCTCTTTCATGAAAAAATAAGGGTTGATCAGTTCTCCAGCCCATACAGTGCAACAATTTTTGTGCCCATCGCACAAGGGAAGCAAACCATCAAAGTTGATTTTATATTTGAGGAATACATTGGTATTGATGTCCACCAAAAACTTTCCTTTACGAGAGAGAGCAATTCAATTGTGCTTTTAAAAAGAAACAAGAAGCAGGCTTCTTGTCCTCCACCTGAAGAGATATATGTTATAGAAGATGATAACATAACTGTACCTCGTTTACCAACAAAAGAGCTATGCAAATTGAACGAGGACAGGGATTCCATTCCAAGTTTCGACCTCTTGGATGAAAGTTTTGAGGAAGTGGAAGGTGTGCGTGCTTTTGGGGTTGTAGAGGACGAATGCAAAAGCATCACCGAGAAAACAGTCTTTGACCACATTCGGGAGAAAGCCAAAAACTTTTCTCTCCTGTCTGCATATGATAACATTCACTTTCCATCACTAGAGGTCCTTCTTTCAAGAAATCATGCCCGTGAGAAGAGGCCTGATCATCGTCATGAGGTAGTTGTTCTGGATGATGAAGACAGACCTGAAGTTCCTCAACGAAATGATGTCAATTTGCAAGTTGAGCTGAGGAAGGCAGAACAAGATGATATCAAATTTTATCTGAACGATCATTGTACAACTGGAAGCTCTAATATAGTTGATACAGGTGTTTTCCTTCCTGAACCTGAAGCAATAACTCATGAAAAATCAACTGAAGAAACAGTTTTTGACCATATACGGAGAAAATCTAAGGATTTCCCACCGATTAATAAGCTTAATTGTGCGGAATCAATAATCCATAAAACGGAATTATTCTCAAAGATTAATCCTAGTCCTCCCAGTTCTTTGAGCGATGCTTTTGGTGTGGCAAGAGAGACGAATTCCTTAGAGGTCACCGATAATATGCTTACTTCATACATGAAAACTGCTGCTGAAGTAGAAAAATATACATCCAGTATTCAGGTTGGTACTTGA 3402 0.3977 MDSYSLKSVFDLPAPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDWNKKFGPWGINCLELTGDNESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDISLLLIDEVHLLNDPRGAALEAIVSRIKIVSGNPKMKSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNPFIKNREQQDRLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCVTEHLLAEIVQLTVSDITKAIEWLKRSYLYVRMKKNPMNYAIKKGISGDRLEKHVQDICVRKVNELSQNDMVWVDEDGFLLRPLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCCAEEIAWIQLRRNEKKLLNEINADKDGRLRFHILGDKRKKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSICSNGCRIAKCLKDYFVYKRNYKGTVNSALLAKSLGQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEELADADPRRIELVTGRKYPFGNHIKDSLLSLPPKVDVTLAEIESHIQGNSKLVVTLARISQSGQSVKRHYADMIVGSEEDNTILFHEKIRVDQFSSPYSATIFVPIAQGKQTIKVDFIFEEYIGIDVHQKLSFTRESNSIVLLKRNKKQASCPPPEEIYVIEDDNITVPRLPTKELCKLNEDRDSIPSFDLLDESFEEVEGVRAFGVVEDECKSITEKTVFDHIREKAKNFSLLSAYDNIHFPSLEVLLSRNHAREKRPDHRHEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVDTGVFLPEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDAFGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQVGT* 1134
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0585 1133 Gene3D - 237 438 IPR027417 -
Gso16g0585 1133 SUPERFAMILY Sec63 N-terminal domain-like 561 749 - -
Gso16g0585 1133 Gene3D - 445 531 IPR036388 -
Gso16g0585 1133 Gene3D - 16 236 IPR027417 -
Gso16g0585 1133 Pfam Sec63 Brl domain 534 848 IPR004179 -
Gso16g0585 1133 CDD DEXHc_HFM1 24 237 - -
Gso16g0585 1133 CDD SF2_C_Ski2 236 427 - -
Gso16g0585 1133 SUPERFAMILY "Winged helix" DNA-binding domain 444 546 IPR036390 -
Gso16g0585 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 429 IPR027417 -
Gso16g0585 1133 Gene3D - 538 688 - -
Gso16g0585 1133 Gene3D - 694 734 - -
Gso16g0585 1133 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 229 IPR014001 -
Gso16g0585 1133 SMART helicmild6 327 415 IPR001650 -
Gso16g0585 1133 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 263 460 IPR001650 -
Gso16g0585 1133 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 1 1004 - -
Gso16g0585 1133 Pfam Helicase conserved C-terminal domain 263 413 IPR001650 -
Gso16g0585 1133 SMART Sec63_2 534 850 IPR004179 -
Gso16g0585 1133 Pfam DEAD/DEAH box helicase 28 216 IPR011545 GO:0003676|GO:0005524
Gso16g0585 1133 SMART ultradead3 21 241 IPR014001 -
Gso16g0585 1133 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 1 1004 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso16g0585 Gso-Chr16 7212532 7220296 Transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0585 K15271 - gmx:100802318 2246.08
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1223 18 26872294 26874901 Gso16g0585 16 7212532 7220296 GST