Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0581 ATGGCCTCATCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTCCTGAGAAGGAAATGCATGCCGGATTGCATTTTCGCGCCATATTTCCCACCAGAAGAGCCTCAGAAATTCGCCAATGTGCACAAGATATTCGGTGCAAGCAACGTGAGCAAGCTTCTGAATGAGGTGCAGCCTCATCAGAGAGAGGATGCAGTGAATTCTCTGGCCTATGAAGCCGAGGCAAGGATAAAGGATCCAGTTTATGGGTGTGTTGGGGCAATCTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAGAAGGAACTTGATGCCACAAGTGCTGATTTGATTCGTTATACTTGCAATGAAATGCCAACTACTACTCAAGATGGTAGAAGGATTATTGGTGAAGGGGGTGGTTCTTCTCTTGGTCAATCTTCTGGTTACTATTACCCTTCTCCTTGGAACAATGATACACTTGGAGATGGTTATCACAGAGGTGACAATATATAA 495 0.4586 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATSADLIRYTCNEMPTTTQDGRRIIGEGGGSSLGQSSGYYYPSPWNNDTLGDGYHRGDNI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0581 164 Coils Coil 89 109 - -
Gso16g0581 164 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gso16g0581 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 154 - -
Gso16g0581 164 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gso16g0581 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0581 Gso-Chr16 7137635 7139731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0581 4 127 AS2 family AT3G27650 78.400 1.83e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso16g0581 LOB 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0581 - - gmx:100800167 311.612